Cluster: MGYG000003187_CGC50
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003187
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003187_13 | MGYG000003187_13_53 | 54650 | 56083 | - | GH1 |
| TF | MGYG000003187_13 | MGYG000003187_13_54 | 56197 | 56928 | - | HTH_6 |
| pfam | MGYG000003187_13 | MGYG000003187_13_55 | 56980 | 57291 | + | ASCH |
| TC | MGYG000003187_13 | MGYG000003187_13_56 | 57457 | 58116 | + | 1.C.113.1.10 |
Gene ID: MGYG000003187_13_53
Type: CAZyme
Location: 54650 - 56083 (-)
Type: CAZyme
Location: 54650 - 56083 (-)
Gene ID: MGYG000003187_13_54
Type: TF
Location: 56197 - 56928 (-)
Type: TF
Location: 56197 - 56928 (-)
Gene ID: MGYG000003187_13_55
Type: pfam
Location: 56980 - 57291 (+)
Type: pfam
Location: 56980 - 57291 (+)
Gene ID: MGYG000003187_13_56
Type: TC
Location: 57457 - 58116 (+)
Type: TC
Location: 57457 - 58116 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003187_13_53 | vegan > omnivore | 1.72351 | 0.01287 |
| MGYG000003187_13_53 | vegetarian > omnivore | 1.38592 | 0.03400 |
| MGYG000003187_13_54 | vegetarian > omnivore | 1.45197 | 0.03400 |
| MGYG000003187_13_54 | vegetarian > vegan | 1.50467 | 0.03778 |