Cluster: MGYG000003187_CGC48
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003187
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003187_12 | MGYG000003187_12_136 | 143908 | 144222 | + | 4.A.3.2.6 |
| TC | MGYG000003187_12 | MGYG000003187_12_137 | 144235 | 145560 | + | 4.A.3.2.6 |
| CAZyme | MGYG000003187_12 | MGYG000003187_12_138 | 145578 | 146963 | + | GH1 |
| TC | MGYG000003187_12 | MGYG000003187_12_139 | 146979 | 147281 | + | 4.A.3.2.1 |
Gene ID: MGYG000003187_12_136
Type: TC
Location: 143908 - 144222 (+)
Type: TC
Location: 143908 - 144222 (+)
Gene ID: MGYG000003187_12_137
Type: TC
Location: 144235 - 145560 (+)
Type: TC
Location: 144235 - 145560 (+)
Gene ID: MGYG000003187_12_138
Type: CAZyme
Location: 145578 - 146963 (+)
Type: CAZyme
Location: 145578 - 146963 (+)
Gene ID: MGYG000003187_12_139
Type: TC
Location: 146979 - 147281 (+)
Type: TC
Location: 146979 - 147281 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003187_12_136 | vegetarian > omnivore | 2.19152 | 0.03400 |
| MGYG000003187_12_136 | vegetarian > vegan | 1.44282 | 0.03778 |
| MGYG000003187_12_137 | vegetarian > omnivore | 1.62330 | 0.03400 |
| MGYG000003187_12_138 | vegetarian > omnivore | 1.44195 | 0.02685 |
| MGYG000003187_12_138 | vegetarian > vegan | 1.07698 | 0.03778 |
| MGYG000003187_12_139 | vegetarian > omnivore | 1.76472 | 0.03400 |