Cluster: MGYG000003187_CGC42
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003187
- CGC Family ID: CGCFAM_01019
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003187_11 | MGYG000003187_11_58 | 58119 | 59486 | - | GH4 |
| TC | MGYG000003187_11 | MGYG000003187_11_59 | 59498 | 61042 | - | 4.A.1.1.16 |
| peptidase | MGYG000003187_11 | MGYG000003187_11_60 | 61329 | 66296 | + | I39.008 |
| CAZyme | MGYG000003187_11 | MGYG000003187_11_61 | 66298 | 68622 | + | GT51 |
Gene ID: MGYG000003187_11_58
Type: CAZyme
Location: 58119 - 59486 (-)
Type: CAZyme
Location: 58119 - 59486 (-)
Gene ID: MGYG000003187_11_59
Type: TC
Location: 59498 - 61042 (-)
Type: TC
Location: 59498 - 61042 (-)
Gene ID: MGYG000003187_11_60
Type: peptidase
Location: 61329 - 66296 (+)
Type: peptidase
Location: 61329 - 66296 (+)
Gene ID: MGYG000003187_11_61
Type: CAZyme
Location: 66298 - 68622 (+)
Type: CAZyme
Location: 66298 - 68622 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003187_11_58 | vegetarian > omnivore | 1.06126 | 0.03400 |
| MGYG000003187_11_59 | vegetarian > omnivore | 2.48844 | 0.03400 |
| MGYG000003187_11_59 | vegetarian > vegan | 1.58061 | 0.03778 |
| MGYG000003187_11_61 | vegetarian > omnivore | 1.34963 | 0.03400 |