Cluster: MGYG000003187_CGC39
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000003187
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003187_9 | MGYG000003187_9_91 | 89391 | 90731 | + | 2.A.8.1.8 |
| TC | MGYG000003187_9 | MGYG000003187_9_92 | 90823 | 91416 | - | 2.A.95.1.5 |
| pfam | MGYG000003187_9 | MGYG000003187_9_93 | 91592 | 92695 | + | Semialdhyde_dh | Semialdhyde_dhC |
| CAZyme | MGYG000003187_9 | MGYG000003187_9_94 | 92945 | 95131 | + | CBM48 | GH13_9 |
| CAZyme | MGYG000003187_9 | MGYG000003187_9_95 | 95128 | 97104 | + | CBM48 | GH13_11 |
| pfam | MGYG000003187_9 | MGYG000003187_9_96 | 97123 | 98418 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | MGYG000003187_9 | MGYG000003187_9_97 | 98418 | 99851 | + | GT5 |
| CAZyme | MGYG000003187_9 | MGYG000003187_9_98 | 99871 | 102318 | + | GT35 |
| pfam | MGYG000003187_9 | MGYG000003187_9_99 | 102409 | 103917 | - | DAO | DAO_C |
| STP | MGYG000003187_9 | MGYG000003187_9_100 | 104125 | 104454 | + | Rhodanese |
| TC | MGYG000003187_9 | MGYG000003187_9_101 | 104499 | 105329 | + | 9.B.104.1.1 |
| TF | MGYG000003187_9 | MGYG000003187_9_102 | 105348 | 106106 | + | HTH_DeoR |
| TF | MGYG000003187_9 | MGYG000003187_9_103 | 106237 | 108942 | - | GerE |
| CAZyme | MGYG000003187_9 | MGYG000003187_9_104 | 109529 | 111922 | + | GT35 |
| CAZyme | MGYG000003187_9 | MGYG000003187_9_105 | 111932 | 114019 | + | GH77 |
Gene ID: MGYG000003187_9_91
Type: TC
Location: 89391 - 90731 (+)
Type: TC
Location: 89391 - 90731 (+)
Gene ID: MGYG000003187_9_92
Type: TC
Location: 90823 - 91416 (-)
Type: TC
Location: 90823 - 91416 (-)
Gene ID: MGYG000003187_9_93
Type: pfam
Location: 91592 - 92695 (+)
Type: pfam
Location: 91592 - 92695 (+)
Gene ID: MGYG000003187_9_94
Type: CAZyme
Location: 92945 - 95131 (+)
Type: CAZyme
Location: 92945 - 95131 (+)
Gene ID: MGYG000003187_9_95
Type: CAZyme
Location: 95128 - 97104 (+)
Type: CAZyme
Location: 95128 - 97104 (+)
Gene ID: MGYG000003187_9_96
Type: pfam
Location: 97123 - 98418 (+)
Type: pfam
Location: 97123 - 98418 (+)
Gene ID: MGYG000003187_9_97
Type: CAZyme
Location: 98418 - 99851 (+)
Type: CAZyme
Location: 98418 - 99851 (+)
Gene ID: MGYG000003187_9_98
Type: CAZyme
Location: 99871 - 102318 (+)
Type: CAZyme
Location: 99871 - 102318 (+)
Gene ID: MGYG000003187_9_99
Type: pfam
Location: 102409 - 103917 (-)
Type: pfam
Location: 102409 - 103917 (-)
Gene ID: MGYG000003187_9_100
Type: STP
Location: 104125 - 104454 (+)
Type: STP
Location: 104125 - 104454 (+)
Gene ID: MGYG000003187_9_101
Type: TC
Location: 104499 - 105329 (+)
Type: TC
Location: 104499 - 105329 (+)
Gene ID: MGYG000003187_9_102
Type: TF
Location: 105348 - 106106 (+)
Type: TF
Location: 105348 - 106106 (+)
Gene ID: MGYG000003187_9_103
Type: TF
Location: 106237 - 108942 (-)
Type: TF
Location: 106237 - 108942 (-)
Gene ID: MGYG000003187_9_104
Type: CAZyme
Location: 109529 - 111922 (+)
Type: CAZyme
Location: 109529 - 111922 (+)
Gene ID: MGYG000003187_9_105
Type: CAZyme
Location: 111932 - 114019 (+)
Type: CAZyme
Location: 111932 - 114019 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.