Cluster: MGYG000003187_CGC37
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003187
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003187_7 | MGYG000003187_7_29 | 38553 | 40370 | - | CBM73 | GH19 |
| CAZyme | MGYG000003187_7 | MGYG000003187_7_30 | 40511 | 40957 | - | GH23 |
| CAZyme | MGYG000003187_7 | MGYG000003187_7_31 | 41100 | 43799 | - | GH18 |
| TC | MGYG000003187_7 | MGYG000003187_7_32 | 44056 | 44853 | - | 3.A.15.2.1 |
| pfam | MGYG000003187_7 | MGYG000003187_7_33 | 44850 | 45335 | - | T2SSM |
| pfam | MGYG000003187_7 | MGYG000003187_7_34 | 45332 | 46477 | - | T2SSL | GspL_C |
| TC | MGYG000003187_7 | MGYG000003187_7_35 | 46493 | 47503 | - | 3.A.15.1.1 |
| TC | MGYG000003187_7 | MGYG000003187_7_36 | 47500 | 48147 | - | 3.A.15.3.1 |
| pfam | MGYG000003187_7 | MGYG000003187_7_37 | 48144 | 48530 | - | T2SSI | N_methyl |
| TC | MGYG000003187_7 | MGYG000003187_7_38 | 48523 | 49008 | - | 3.A.15.1.1 |
| TC | MGYG000003187_7 | MGYG000003187_7_39 | 49008 | 49451 | - | 3.A.15.1.1 |
| TC | MGYG000003187_7 | MGYG000003187_7_40 | 49454 | 50662 | - | 3.A.15.1.1 |
| TC | MGYG000003187_7 | MGYG000003187_7_41 | 50662 | 52146 | - | 3.A.15.1.1 |
| TC | MGYG000003187_7 | MGYG000003187_7_42 | 52161 | 54071 | - | 1.B.22.1.1 |
Gene ID: MGYG000003187_7_29
Type: CAZyme
Location: 38553 - 40370 (-)
Type: CAZyme
Location: 38553 - 40370 (-)
Gene ID: MGYG000003187_7_30
Type: CAZyme
Location: 40511 - 40957 (-)
Type: CAZyme
Location: 40511 - 40957 (-)
Gene ID: MGYG000003187_7_31
Type: CAZyme
Location: 41100 - 43799 (-)
Type: CAZyme
Location: 41100 - 43799 (-)
Gene ID: MGYG000003187_7_32
Type: TC
Location: 44056 - 44853 (-)
Type: TC
Location: 44056 - 44853 (-)
Gene ID: MGYG000003187_7_33
Type: pfam
Location: 44850 - 45335 (-)
Type: pfam
Location: 44850 - 45335 (-)
Gene ID: MGYG000003187_7_34
Type: pfam
Location: 45332 - 46477 (-)
Type: pfam
Location: 45332 - 46477 (-)
Gene ID: MGYG000003187_7_35
Type: TC
Location: 46493 - 47503 (-)
Type: TC
Location: 46493 - 47503 (-)
Gene ID: MGYG000003187_7_36
Type: TC
Location: 47500 - 48147 (-)
Type: TC
Location: 47500 - 48147 (-)
Gene ID: MGYG000003187_7_37
Type: pfam
Location: 48144 - 48530 (-)
Type: pfam
Location: 48144 - 48530 (-)
Gene ID: MGYG000003187_7_38
Type: TC
Location: 48523 - 49008 (-)
Type: TC
Location: 48523 - 49008 (-)
Gene ID: MGYG000003187_7_39
Type: TC
Location: 49008 - 49451 (-)
Type: TC
Location: 49008 - 49451 (-)
Gene ID: MGYG000003187_7_40
Type: TC
Location: 49454 - 50662 (-)
Type: TC
Location: 49454 - 50662 (-)
Gene ID: MGYG000003187_7_41
Type: TC
Location: 50662 - 52146 (-)
Type: TC
Location: 50662 - 52146 (-)
Gene ID: MGYG000003187_7_42
Type: TC
Location: 52161 - 54071 (-)
Type: TC
Location: 52161 - 54071 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003187_7_29 | vegetarian > omnivore | 1.16377 | 0.03400 |
| MGYG000003187_7_37 | vegetarian > omnivore | 1.50790 | 0.03400 |
| MGYG000003187_7_38 | vegetarian > omnivore | 2.60316 | 0.03400 |
| MGYG000003187_7_39 | vegetarian > omnivore | 5.00021 | 0.03400 |
| MGYG000003187_7_40 | vegetarian > omnivore | 1.04145 | 0.03400 |
| MGYG000003187_7_42 | vegetarian > omnivore | 1.40470 | 0.04336 |