Cluster: MGYG000003187_CGC35
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003187
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003187_6 | MGYG000003187_6_63 | 74411 | 75511 | + | 1.B.42.1.2 |
| TC | MGYG000003187_6 | MGYG000003187_6_64 | 75511 | 76593 | + | 1.B.42.1.2 |
| STP | MGYG000003187_6 | MGYG000003187_6_65 | 76728 | 79061 | + | HATPase_c | HisKA | PAS | Response_reg |
| peptidase | MGYG000003187_6 | MGYG000003187_6_66 | 79290 | 79943 | + | C56.975 |
| CAZyme | MGYG000003187_6 | MGYG000003187_6_67 | 79940 | 80665 | + | GT51 |
| TC | MGYG000003187_6 | MGYG000003187_6_68 | 80662 | 80934 | - | 8.A.8.1.5 |
| pfam | MGYG000003187_6 | MGYG000003187_6_69 | 80931 | 81785 | - | RapZ-like_N | PapZ_C |
| TC | MGYG000003187_6 | MGYG000003187_6_70 | 81831 | 82322 | - | 4.A.2.1.7 |
| pfam | MGYG000003187_6 | MGYG000003187_6_71 | 82405 | 82692 | - | Ribosomal_S30AE |
| pfam | MGYG000003187_6 | MGYG000003187_6_72 | 82715 | 84148 | - | Sigma54_AID | Sigma54_DBD | Sigma54_CBD |
| TC | MGYG000003187_6 | MGYG000003187_6_73 | 84196 | 84921 | - | 1.B.42.1.2 |
| TC | MGYG000003187_6 | MGYG000003187_6_74 | 84928 | 85482 | - | 1.B.42.1.2 |
| TC | MGYG000003187_6 | MGYG000003187_6_75 | 85451 | 86026 | - | 1.B.42.1.2 |
| pfam | MGYG000003187_6 | MGYG000003187_6_76 | 86023 | 86589 | - | Hydrolase_3 |
| STP | MGYG000003187_6 | MGYG000003187_6_77 | 86604 | 87590 | - | CBS | CBS | SIS |
| TC | MGYG000003187_6 | MGYG000003187_6_78 | 87604 | 88581 | - | 2.A.19.5.1 |
| TC | MGYG000003187_6 | MGYG000003187_6_79 | 88811 | 89623 | + | 3.A.1.27.3 |
| TC | MGYG000003187_6 | MGYG000003187_6_80 | 89631 | 90413 | + | 3.A.1.27.3 |
| TC | MGYG000003187_6 | MGYG000003187_6_81 | 90418 | 90978 | + | 3.A.1.27.3 |
| TC | MGYG000003187_6 | MGYG000003187_6_82 | 90982 | 91617 | + | 3.A.1.27.3 |
| TC | MGYG000003187_6 | MGYG000003187_6_83 | 91617 | 91910 | + | 3.A.1.27.3 |
Gene ID: MGYG000003187_6_63
Type: TC
Location: 74411 - 75511 (+)
Type: TC
Location: 74411 - 75511 (+)
Gene ID: MGYG000003187_6_64
Type: TC
Location: 75511 - 76593 (+)
Type: TC
Location: 75511 - 76593 (+)
Gene ID: MGYG000003187_6_65
Type: STP
Location: 76728 - 79061 (+)
Type: STP
Location: 76728 - 79061 (+)
Gene ID: MGYG000003187_6_66
Type: peptidase
Location: 79290 - 79943 (+)
Type: peptidase
Location: 79290 - 79943 (+)
Gene ID: MGYG000003187_6_67
Type: CAZyme
Location: 79940 - 80665 (+)
Type: CAZyme
Location: 79940 - 80665 (+)
Gene ID: MGYG000003187_6_68
Type: TC
Location: 80662 - 80934 (-)
Type: TC
Location: 80662 - 80934 (-)
Gene ID: MGYG000003187_6_69
Type: pfam
Location: 80931 - 81785 (-)
Type: pfam
Location: 80931 - 81785 (-)
Gene ID: MGYG000003187_6_70
Type: TC
Location: 81831 - 82322 (-)
Type: TC
Location: 81831 - 82322 (-)
Gene ID: MGYG000003187_6_71
Type: pfam
Location: 82405 - 82692 (-)
Type: pfam
Location: 82405 - 82692 (-)
Gene ID: MGYG000003187_6_72
Type: pfam
Location: 82715 - 84148 (-)
Type: pfam
Location: 82715 - 84148 (-)
Gene ID: MGYG000003187_6_73
Type: TC
Location: 84196 - 84921 (-)
Type: TC
Location: 84196 - 84921 (-)
Gene ID: MGYG000003187_6_74
Type: TC
Location: 84928 - 85482 (-)
Type: TC
Location: 84928 - 85482 (-)
Gene ID: MGYG000003187_6_75
Type: TC
Location: 85451 - 86026 (-)
Type: TC
Location: 85451 - 86026 (-)
Gene ID: MGYG000003187_6_76
Type: pfam
Location: 86023 - 86589 (-)
Type: pfam
Location: 86023 - 86589 (-)
Gene ID: MGYG000003187_6_77
Type: STP
Location: 86604 - 87590 (-)
Type: STP
Location: 86604 - 87590 (-)
Gene ID: MGYG000003187_6_78
Type: TC
Location: 87604 - 88581 (-)
Type: TC
Location: 87604 - 88581 (-)
Gene ID: MGYG000003187_6_79
Type: TC
Location: 88811 - 89623 (+)
Type: TC
Location: 88811 - 89623 (+)
Gene ID: MGYG000003187_6_80
Type: TC
Location: 89631 - 90413 (+)
Type: TC
Location: 89631 - 90413 (+)
Gene ID: MGYG000003187_6_81
Type: TC
Location: 90418 - 90978 (+)
Type: TC
Location: 90418 - 90978 (+)
Gene ID: MGYG000003187_6_82
Type: TC
Location: 90982 - 91617 (+)
Type: TC
Location: 90982 - 91617 (+)
Gene ID: MGYG000003187_6_83
Type: TC
Location: 91617 - 91910 (+)
Type: TC
Location: 91617 - 91910 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003187_6_67 | vegetarian > omnivore | 1.60977 | 0.03400 |