Cluster: MGYG000003187_CGC32
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000003187
- CGC Family ID: CGCFAM_09886
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003187_5 | MGYG000003187_5_179 | 182593 | 183588 | - | PL5_1 |
| STP | MGYG000003187_5 | MGYG000003187_5_180 | 183727 | 184959 | + | BLUF | EAL |
| TC | MGYG000003187_5 | MGYG000003187_5_181 | 185162 | 186712 | + | 1.B.52.2.2 |
| CAZyme | MGYG000003187_5 | MGYG000003187_5_182 | 187017 | 188789 | + | GH13_10 |
| CAZyme | MGYG000003187_5 | MGYG000003187_5_183 | 188789 | 191305 | + | GH13_26 |
| CAZyme | MGYG000003187_5 | MGYG000003187_5_184 | 191335 | 193410 | + | CBM48 | GH13_11 |
| pfam | MGYG000003187_5 | MGYG000003187_5_185 | 193418 | 193702 | - | VF530 |
| TC | MGYG000003187_5 | MGYG000003187_5_186 | 193855 | 195198 | + | 2.A.1.38.2 |
| pfam | MGYG000003187_5 | MGYG000003187_5_187 | 195266 | 195976 | + | Abhydrolase_6 |
| pfam | MGYG000003187_5 | MGYG000003187_5_188 | 196038 | 197378 | - | GHL10 |
| TC | MGYG000003187_5 | MGYG000003187_5_189 | 197594 | 198979 | + | 3.D.4.3.2 |
Gene ID: MGYG000003187_5_179
Type: CAZyme
Location: 182593 - 183588 (-)
Type: CAZyme
Location: 182593 - 183588 (-)
Gene ID: MGYG000003187_5_180
Type: STP
Location: 183727 - 184959 (+)
Type: STP
Location: 183727 - 184959 (+)
Gene ID: MGYG000003187_5_181
Type: TC
Location: 185162 - 186712 (+)
Type: TC
Location: 185162 - 186712 (+)
Gene ID: MGYG000003187_5_182
Type: CAZyme
Location: 187017 - 188789 (+)
Type: CAZyme
Location: 187017 - 188789 (+)
Gene ID: MGYG000003187_5_183
Type: CAZyme
Location: 188789 - 191305 (+)
Type: CAZyme
Location: 188789 - 191305 (+)
Gene ID: MGYG000003187_5_184
Type: CAZyme
Location: 191335 - 193410 (+)
Type: CAZyme
Location: 191335 - 193410 (+)
Gene ID: MGYG000003187_5_185
Type: pfam
Location: 193418 - 193702 (-)
Type: pfam
Location: 193418 - 193702 (-)
Gene ID: MGYG000003187_5_186
Type: TC
Location: 193855 - 195198 (+)
Type: TC
Location: 193855 - 195198 (+)
Gene ID: MGYG000003187_5_187
Type: pfam
Location: 195266 - 195976 (+)
Type: pfam
Location: 195266 - 195976 (+)
Gene ID: MGYG000003187_5_188
Type: pfam
Location: 196038 - 197378 (-)
Type: pfam
Location: 196038 - 197378 (-)
Gene ID: MGYG000003187_5_189
Type: TC
Location: 197594 - 198979 (+)
Type: TC
Location: 197594 - 198979 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.