Cluster: MGYG000003187_CGC31
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003187
- CGC Family ID: CGCFAM_10553
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003187_5 | MGYG000003187_5_13 | 10240 | 11613 | + | AA7 |
| pfam | MGYG000003187_5 | MGYG000003187_5_14 | 11754 | 12029 | + | Trns_repr_metal |
| pfam | MGYG000003187_5 | MGYG000003187_5_15 | 12059 | 13177 | + | ADH_zinc_N | ADH_N | ADH_zinc_N_2 |
| TC | MGYG000003187_5 | MGYG000003187_5_16 | 13353 | 15044 | + | 1.B.52.2.1 |
Gene ID: MGYG000003187_5_13
Type: CAZyme
Location: 10240 - 11613 (+)
Type: CAZyme
Location: 10240 - 11613 (+)
Gene ID: MGYG000003187_5_14
Type: pfam
Location: 11754 - 12029 (+)
Type: pfam
Location: 11754 - 12029 (+)
Gene ID: MGYG000003187_5_15
Type: pfam
Location: 12059 - 13177 (+)
Type: pfam
Location: 12059 - 13177 (+)
Gene ID: MGYG000003187_5_16
Type: TC
Location: 13353 - 15044 (+)
Type: TC
Location: 13353 - 15044 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003187_5_14 | vegetarian > omnivore | 1.58157 | 0.03400 |
| MGYG000003187_5_14 | vegetarian > vegan | 1.55241 | 0.03778 |
| MGYG000003187_5_15 | vegetarian > omnivore | 1.08349 | 0.03400 |
| MGYG000003187_5_15 | vegetarian > vegan | 1.06782 | 0.03778 |