Cluster: MGYG000003187_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003187
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003187_1 | MGYG000003187_1_163 | 185642 | 187939 | + | GH3 |
| TC | MGYG000003187_1 | MGYG000003187_1_164 | 188128 | 189045 | + | 3.A.1.12.15 |
| TC | MGYG000003187_1 | MGYG000003187_1_165 | 189061 | 190218 | + | 3.A.1.12.15 |
| TC | MGYG000003187_1 | MGYG000003187_1_166 | 190211 | 191146 | + | 3.A.1.12.15 |
| TC | MGYG000003187_1 | MGYG000003187_1_167 | 191143 | 191880 | + | 3.A.1.12.15 |
| NULL(UNKNOWN) | MGYG000003187_1 | MGYG000003187_1_168 | 191855 | 191968 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | MGYG000003187_1 | MGYG000003187_1_169 | 192028 | 192783 | - | MerR |
| TC | MGYG000003187_1 | MGYG000003187_1_170 | 192914 | 194665 | + | 9.B.33.1.1 |
Gene ID: MGYG000003187_1_163
Type: CAZyme
Location: 185642 - 187939 (+)
Type: CAZyme
Location: 185642 - 187939 (+)
Gene ID: MGYG000003187_1_164
Type: TC
Location: 188128 - 189045 (+)
Type: TC
Location: 188128 - 189045 (+)
Gene ID: MGYG000003187_1_165
Type: TC
Location: 189061 - 190218 (+)
Type: TC
Location: 189061 - 190218 (+)
Gene ID: MGYG000003187_1_166
Type: TC
Location: 190211 - 191146 (+)
Type: TC
Location: 190211 - 191146 (+)
Gene ID: MGYG000003187_1_167
Type: TC
Location: 191143 - 191880 (+)
Type: TC
Location: 191143 - 191880 (+)
Gene ID: MGYG000003187_1_168
Type:
Location: 191855 - 191968 (-)
Type:
Location: 191855 - 191968 (-)
Gene ID: MGYG000003187_1_169
Type: TF
Location: 192028 - 192783 (-)
Type: TF
Location: 192028 - 192783 (-)
Gene ID: MGYG000003187_1_170
Type: TC
Location: 192914 - 194665 (+)
Type: TC
Location: 192914 - 194665 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003187_1_166 | vegetarian > vegan | 1.08974 | 0.03768 |
| MGYG000003187_1_168 | vegetarian > omnivore | 5.27466 | 0.02685 |
| MGYG000003187_1_168 | vegetarian > vegan | 3.35148 | 0.03778 |