Cluster: MGYG000003187_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003187
- CGC Family ID: CGCFAM_00236
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003187_2 | MGYG000003187_2_263 | 274540 | 276708 | + | 1.B.14.1.15 |
| pfam | MGYG000003187_2 | MGYG000003187_2_264 | 276829 | 278802 | + | PhoX |
| TC | MGYG000003187_2 | MGYG000003187_2_265 | 278906 | 280294 | + | 2.A.3.1.1 |
| TF | MGYG000003187_2 | MGYG000003187_2_266 | 280347 | 280646 | - | HTH_3 |
| pfam | MGYG000003187_2 | MGYG000003187_2_267 | 280634 | 280996 | - | Gp49 |
| TC | MGYG000003187_2 | MGYG000003187_2_268 | 281329 | 282519 | + | 2.A.1.10.4 |
| pfam | MGYG000003187_2 | MGYG000003187_2_269 | 282534 | 283559 | + | AP_endonuc_2 |
| CAZyme | MGYG000003187_2 | MGYG000003187_2_270 | 283552 | 284694 | + | GH109 |
| TF | MGYG000003187_2 | MGYG000003187_2_271 | 284770 | 285744 | + | LacI |
| TC | MGYG000003187_2 | MGYG000003187_2_272 | 285746 | 286990 | - | 1.A.23.4.5 |
| TC | MGYG000003187_2 | MGYG000003187_2_273 | 287058 | 288494 | - | 2.A.1.3.38 |
| pfam | MGYG000003187_2 | MGYG000003187_2_274 | 288602 | 289471 | + | HTH_31 | MLTR_LBD |
| TC | MGYG000003187_2 | MGYG000003187_2_275 | 289468 | 290502 | + | 9.B.8.3.4 |
Gene ID: MGYG000003187_2_263
Type: TC
Location: 274540 - 276708 (+)
Type: TC
Location: 274540 - 276708 (+)
Gene ID: MGYG000003187_2_264
Type: pfam
Location: 276829 - 278802 (+)
Type: pfam
Location: 276829 - 278802 (+)
Gene ID: MGYG000003187_2_265
Type: TC
Location: 278906 - 280294 (+)
Type: TC
Location: 278906 - 280294 (+)
Gene ID: MGYG000003187_2_266
Type: TF
Location: 280347 - 280646 (-)
Type: TF
Location: 280347 - 280646 (-)
Gene ID: MGYG000003187_2_267
Type: pfam
Location: 280634 - 280996 (-)
Type: pfam
Location: 280634 - 280996 (-)
Gene ID: MGYG000003187_2_268
Type: TC
Location: 281329 - 282519 (+)
Type: TC
Location: 281329 - 282519 (+)
Gene ID: MGYG000003187_2_269
Type: pfam
Location: 282534 - 283559 (+)
Type: pfam
Location: 282534 - 283559 (+)
Gene ID: MGYG000003187_2_270
Type: CAZyme
Location: 283552 - 284694 (+)
Type: CAZyme
Location: 283552 - 284694 (+)
Gene ID: MGYG000003187_2_271
Type: TF
Location: 284770 - 285744 (+)
Type: TF
Location: 284770 - 285744 (+)
Gene ID: MGYG000003187_2_272
Type: TC
Location: 285746 - 286990 (-)
Type: TC
Location: 285746 - 286990 (-)
Gene ID: MGYG000003187_2_273
Type: TC
Location: 287058 - 288494 (-)
Type: TC
Location: 287058 - 288494 (-)
Gene ID: MGYG000003187_2_274
Type: pfam
Location: 288602 - 289471 (+)
Type: pfam
Location: 288602 - 289471 (+)
Gene ID: MGYG000003187_2_275
Type: TC
Location: 289468 - 290502 (+)
Type: TC
Location: 289468 - 290502 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Leclercia
Species
Leclercia adecarboxylata_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003187_2_263 | vegetarian > omnivore | 3.08882 | 0.03400 |
| MGYG000003187_2_264 | vegetarian > omnivore | 1.71165 | 0.03400 |
| MGYG000003187_2_264 | vegetarian > vegan | 1.53080 | 0.03778 |
| MGYG000003187_2_269 | vegetarian > vegan | 1.78850 | 0.03778 |
| MGYG000003187_2_270 | vegetarian > omnivore | 1.43640 | 0.03400 |
| MGYG000003187_2_271 | vegetarian > omnivore | 2.07997 | 0.03400 |
| MGYG000003187_2_271 | vegetarian > vegan | 1.36637 | 0.03778 |
| MGYG000003187_2_273 | vegetarian > omnivore | 2.19531 | 0.03400 |
| MGYG000003187_2_274 | vegetarian > omnivore | 1.66488 | 0.03400 |
| MGYG000003187_2_274 | vegetarian > vegan | 1.23146 | 0.03778 |