Cluster: MGYG000003184_CGC42
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003184
- CGC Family ID: CGCFAM_00293
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003184_33 | MGYG000003184_33_2 | 570 | 1628 | + | 3.D.6.1.4 |
| TC | MGYG000003184_33 | MGYG000003184_33_3 | 1632 | 2264 | + | 3.D.6.1.4 |
| TC | MGYG000003184_33 | MGYG000003184_33_4 | 2257 | 2952 | + | 3.D.6.1.4 |
| STP | MGYG000003184_33 | MGYG000003184_33_5 | 2949 | 3584 | + | HhH-GPD |
| CAZyme | MGYG000003184_33 | MGYG000003184_33_6 | 3666 | 5351 | - | AA3_2 |
| sulfatase | MGYG000003184_33 | MGYG000003184_33_7 | 5394 | 6860 | - | S1_6 |
| STP | MGYG000003184_33 | MGYG000003184_33_8 | 6872 | 7474 | - | TetR_N |
| TC | MGYG000003184_33 | MGYG000003184_33_9 | 7637 | 9646 | + | 2.A.15.1.3 |
| TC | MGYG000003184_33 | MGYG000003184_33_10 | 10180 | 11685 | + | 2.A.17.1.2 |
Gene ID: MGYG000003184_33_2
Type: TC
Location: 570 - 1628 (+)
Type: TC
Location: 570 - 1628 (+)
Gene ID: MGYG000003184_33_3
Type: TC
Location: 1632 - 2264 (+)
Type: TC
Location: 1632 - 2264 (+)
Gene ID: MGYG000003184_33_4
Type: TC
Location: 2257 - 2952 (+)
Type: TC
Location: 2257 - 2952 (+)
Gene ID: MGYG000003184_33_5
Type: STP
Location: 2949 - 3584 (+)
Type: STP
Location: 2949 - 3584 (+)
Gene ID: MGYG000003184_33_6
Type: CAZyme
Location: 3666 - 5351 (-)
Type: CAZyme
Location: 3666 - 5351 (-)
Gene ID: MGYG000003184_33_7
Type: sulfatase
Location: 5394 - 6860 (-)
Type: sulfatase
Location: 5394 - 6860 (-)
Gene ID: MGYG000003184_33_8
Type: STP
Location: 6872 - 7474 (-)
Type: STP
Location: 6872 - 7474 (-)
Gene ID: MGYG000003184_33_9
Type: TC
Location: 7637 - 9646 (+)
Type: TC
Location: 7637 - 9646 (+)
Gene ID: MGYG000003184_33_10
Type: TC
Location: 10180 - 11685 (+)
Type: TC
Location: 10180 - 11685 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Mixta
Species
Mixta calida
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.