Cluster: MGYG000003184_CGC21
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003184
- CGC Family ID: CGCFAM_02885
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003184_8 | MGYG000003184_8_44 | 43450 | 44127 | + | 1.A.14.2.2 |
| TC | MGYG000003184_8 | MGYG000003184_8_45 | 44596 | 45684 | - | 4.D.2.4.3 |
| pfam | MGYG000003184_8 | MGYG000003184_8_46 | 45684 | 46928 | - | PLDc | PLDc_2 | PLDc_2 |
| pfam | MGYG000003184_8 | MGYG000003184_8_47 | 46925 | 47686 | - | Exo_endo_phos |
| TC | MGYG000003184_8 | MGYG000003184_8_48 | 47865 | 48257 | + | 9.B.15.1.2 |
| TC | MGYG000003184_8 | MGYG000003184_8_49 | 48494 | 49978 | + | 1.I.1.1.3 |
| pfam | MGYG000003184_8 | MGYG000003184_8_50 | 50123 | 51073 | + | Dus |
| TC | MGYG000003184_8 | MGYG000003184_8_51 | 51125 | 52363 | + | 2.A.1.46.7 |
| TC | MGYG000003184_8 | MGYG000003184_8_52 | 52339 | 53943 | - | 2.A.20.1.1 |
| peptidase | MGYG000003184_8 | MGYG000003184_8_53 | 54833 | 55912 | - | C82.UPA |
| CAZyme | MGYG000003184_8 | MGYG000003184_8_54 | 56105 | 57919 | - | GH15 |
| pfam | MGYG000003184_8 | MGYG000003184_8_55 | 58044 | 58826 | + | adh_short | KR | adh_short_C2 |
| TC | MGYG000003184_8 | MGYG000003184_8_56 | 58990 | 59646 | + | 3.A.1.139.2 |
| TC | MGYG000003184_8 | MGYG000003184_8_57 | 59643 | 60404 | + | 3.A.1.139.2 |
| TC | MGYG000003184_8 | MGYG000003184_8_58 | 60401 | 60979 | - | 9.B.27.2.7 |
Gene ID: MGYG000003184_8_44
Type: TC
Location: 43450 - 44127 (+)
Type: TC
Location: 43450 - 44127 (+)
Gene ID: MGYG000003184_8_45
Type: TC
Location: 44596 - 45684 (-)
Type: TC
Location: 44596 - 45684 (-)
Gene ID: MGYG000003184_8_46
Type: pfam
Location: 45684 - 46928 (-)
Type: pfam
Location: 45684 - 46928 (-)
Gene ID: MGYG000003184_8_47
Type: pfam
Location: 46925 - 47686 (-)
Type: pfam
Location: 46925 - 47686 (-)
Gene ID: MGYG000003184_8_48
Type: TC
Location: 47865 - 48257 (+)
Type: TC
Location: 47865 - 48257 (+)
Gene ID: MGYG000003184_8_49
Type: TC
Location: 48494 - 49978 (+)
Type: TC
Location: 48494 - 49978 (+)
Gene ID: MGYG000003184_8_50
Type: pfam
Location: 50123 - 51073 (+)
Type: pfam
Location: 50123 - 51073 (+)
Gene ID: MGYG000003184_8_51
Type: TC
Location: 51125 - 52363 (+)
Type: TC
Location: 51125 - 52363 (+)
Gene ID: MGYG000003184_8_52
Type: TC
Location: 52339 - 53943 (-)
Type: TC
Location: 52339 - 53943 (-)
Gene ID: MGYG000003184_8_53
Type: peptidase
Location: 54833 - 55912 (-)
Type: peptidase
Location: 54833 - 55912 (-)
Gene ID: MGYG000003184_8_54
Type: CAZyme
Location: 56105 - 57919 (-)
Type: CAZyme
Location: 56105 - 57919 (-)
Gene ID: MGYG000003184_8_55
Type: pfam
Location: 58044 - 58826 (+)
Type: pfam
Location: 58044 - 58826 (+)
Gene ID: MGYG000003184_8_56
Type: TC
Location: 58990 - 59646 (+)
Type: TC
Location: 58990 - 59646 (+)
Gene ID: MGYG000003184_8_57
Type: TC
Location: 59643 - 60404 (+)
Type: TC
Location: 59643 - 60404 (+)
Gene ID: MGYG000003184_8_58
Type: TC
Location: 60401 - 60979 (-)
Type: TC
Location: 60401 - 60979 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Mixta
Species
Mixta calida
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.