Cluster: MGYG000003184_CGC19
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003184
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003184_6 | MGYG000003184_6_59 | 62363 | 63547 | + | 2.A.1.15.1 |
| pfam | MGYG000003184_6 | MGYG000003184_6_60 | 63683 | 65026 | + | HGLS |
| peptidase | MGYG000003184_6 | MGYG000003184_6_61 | 65339 | 66811 | + | S09.972 |
| TC | MGYG000003184_6 | MGYG000003184_6_62 | 66988 | 68655 | + | 1.B.52.2.1 |
| TF | MGYG000003184_6 | MGYG000003184_6_63 | 68657 | 69511 | - | HTH_1 |
| STP | MGYG000003184_6 | MGYG000003184_6_64 | 69636 | 70805 | + | Aminotran_1_2 |
| TC | MGYG000003184_6 | MGYG000003184_6_65 | 70824 | 71606 | + | 3.A.1.3.29 |
| peptidase | MGYG000003184_6 | MGYG000003184_6_66 | 71611 | 72837 | - | M20.UPB |
| TC | MGYG000003184_6 | MGYG000003184_6_67 | 72962 | 74545 | + | 3.A.1.5.27 |
| TC | MGYG000003184_6 | MGYG000003184_6_68 | 74726 | 75046 | + | 4.A.3.2.6 |
| TC | MGYG000003184_6 | MGYG000003184_6_69 | 75046 | 76380 | + | 4.A.3.2.6 |
| CAZyme | MGYG000003184_6 | MGYG000003184_6_70 | 76394 | 77788 | + | GH1 |
| TF | MGYG000003184_6 | MGYG000003184_6_71 | 77816 | 78739 | + | LacI |
| pfam | MGYG000003184_6 | MGYG000003184_6_72 | 78854 | 80296 | - | Aldedh |
| TC | MGYG000003184_6 | MGYG000003184_6_73 | 80693 | 81727 | + | 2.A.7.6.1 |
Gene ID: MGYG000003184_6_59
Type: TC
Location: 62363 - 63547 (+)
Type: TC
Location: 62363 - 63547 (+)
Gene ID: MGYG000003184_6_60
Type: pfam
Location: 63683 - 65026 (+)
Type: pfam
Location: 63683 - 65026 (+)
Gene ID: MGYG000003184_6_61
Type: peptidase
Location: 65339 - 66811 (+)
Type: peptidase
Location: 65339 - 66811 (+)
Gene ID: MGYG000003184_6_62
Type: TC
Location: 66988 - 68655 (+)
Type: TC
Location: 66988 - 68655 (+)
Gene ID: MGYG000003184_6_63
Type: TF
Location: 68657 - 69511 (-)
Type: TF
Location: 68657 - 69511 (-)
Gene ID: MGYG000003184_6_64
Type: STP
Location: 69636 - 70805 (+)
Type: STP
Location: 69636 - 70805 (+)
Gene ID: MGYG000003184_6_65
Type: TC
Location: 70824 - 71606 (+)
Type: TC
Location: 70824 - 71606 (+)
Gene ID: MGYG000003184_6_66
Type: peptidase
Location: 71611 - 72837 (-)
Type: peptidase
Location: 71611 - 72837 (-)
Gene ID: MGYG000003184_6_67
Type: TC
Location: 72962 - 74545 (+)
Type: TC
Location: 72962 - 74545 (+)
Gene ID: MGYG000003184_6_68
Type: TC
Location: 74726 - 75046 (+)
Type: TC
Location: 74726 - 75046 (+)
Gene ID: MGYG000003184_6_69
Type: TC
Location: 75046 - 76380 (+)
Type: TC
Location: 75046 - 76380 (+)
Gene ID: MGYG000003184_6_70
Type: CAZyme
Location: 76394 - 77788 (+)
Type: CAZyme
Location: 76394 - 77788 (+)
Gene ID: MGYG000003184_6_71
Type: TF
Location: 77816 - 78739 (+)
Type: TF
Location: 77816 - 78739 (+)
Gene ID: MGYG000003184_6_72
Type: pfam
Location: 78854 - 80296 (-)
Type: pfam
Location: 78854 - 80296 (-)
Gene ID: MGYG000003184_6_73
Type: TC
Location: 80693 - 81727 (+)
Type: TC
Location: 80693 - 81727 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Mixta
Species
Mixta calida
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.