Cluster: MGYG000003184_CGC16
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000003184
- CGC Family ID: CGCFAM_00123
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003184_4 | MGYG000003184_4_109 | 122421 | 123761 | + | 2.A.8.1.8 |
| TC | MGYG000003184_4 | MGYG000003184_4_110 | 123843 | 124436 | - | 2.A.95.1.5 |
| pfam | MGYG000003184_4 | MGYG000003184_4_111 | 124690 | 125796 | + | Semialdhyde_dh | Semialdhyde_dhC |
| CAZyme | MGYG000003184_4 | MGYG000003184_4_112 | 126155 | 128341 | + | CBM48 | GH13_9 |
| CAZyme | MGYG000003184_4 | MGYG000003184_4_113 | 128338 | 130323 | + | CBM48 | GH13_11 |
| pfam | MGYG000003184_4 | MGYG000003184_4_114 | 130334 | 131626 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | MGYG000003184_4 | MGYG000003184_4_115 | 131694 | 133127 | + | GT5 |
| CAZyme | MGYG000003184_4 | MGYG000003184_4_116 | 133148 | 135595 | + | GT35 |
| pfam | MGYG000003184_4 | MGYG000003184_4_117 | 135663 | 137171 | - | DAO | DAO_C |
| STP | MGYG000003184_4 | MGYG000003184_4_118 | 137454 | 137783 | + | Rhodanese |
| TC | MGYG000003184_4 | MGYG000003184_4_119 | 137820 | 138647 | + | 9.B.104.1.1 |
| TF | MGYG000003184_4 | MGYG000003184_4_120 | 138719 | 139477 | + | HTH_DeoR |
| TF | MGYG000003184_4 | MGYG000003184_4_121 | 139481 | 142198 | - | GerE |
| CAZyme | MGYG000003184_4 | MGYG000003184_4_122 | 142793 | 145198 | + | GT35 |
| CAZyme | MGYG000003184_4 | MGYG000003184_4_123 | 145249 | 147321 | + | GH77 |
Gene ID: MGYG000003184_4_109
Type: TC
Location: 122421 - 123761 (+)
Type: TC
Location: 122421 - 123761 (+)
Gene ID: MGYG000003184_4_110
Type: TC
Location: 123843 - 124436 (-)
Type: TC
Location: 123843 - 124436 (-)
Gene ID: MGYG000003184_4_111
Type: pfam
Location: 124690 - 125796 (+)
Type: pfam
Location: 124690 - 125796 (+)
Gene ID: MGYG000003184_4_112
Type: CAZyme
Location: 126155 - 128341 (+)
Type: CAZyme
Location: 126155 - 128341 (+)
Gene ID: MGYG000003184_4_113
Type: CAZyme
Location: 128338 - 130323 (+)
Type: CAZyme
Location: 128338 - 130323 (+)
Gene ID: MGYG000003184_4_114
Type: pfam
Location: 130334 - 131626 (+)
Type: pfam
Location: 130334 - 131626 (+)
Gene ID: MGYG000003184_4_115
Type: CAZyme
Location: 131694 - 133127 (+)
Type: CAZyme
Location: 131694 - 133127 (+)
Gene ID: MGYG000003184_4_116
Type: CAZyme
Location: 133148 - 135595 (+)
Type: CAZyme
Location: 133148 - 135595 (+)
Gene ID: MGYG000003184_4_117
Type: pfam
Location: 135663 - 137171 (-)
Type: pfam
Location: 135663 - 137171 (-)
Gene ID: MGYG000003184_4_118
Type: STP
Location: 137454 - 137783 (+)
Type: STP
Location: 137454 - 137783 (+)
Gene ID: MGYG000003184_4_119
Type: TC
Location: 137820 - 138647 (+)
Type: TC
Location: 137820 - 138647 (+)
Gene ID: MGYG000003184_4_120
Type: TF
Location: 138719 - 139477 (+)
Type: TF
Location: 138719 - 139477 (+)
Gene ID: MGYG000003184_4_121
Type: TF
Location: 139481 - 142198 (-)
Type: TF
Location: 139481 - 142198 (-)
Gene ID: MGYG000003184_4_122
Type: CAZyme
Location: 142793 - 145198 (+)
Type: CAZyme
Location: 142793 - 145198 (+)
Gene ID: MGYG000003184_4_123
Type: CAZyme
Location: 145249 - 147321 (+)
Type: CAZyme
Location: 145249 - 147321 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Mixta
Species
Mixta calida
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003184_4_109 | vegetarian > omnivore | 1.87399 | 0.04288 |