Cluster: MGYG000003183_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003183
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003183_50 | MGYG000003183_50_1 | 152 | 1912 | - | 4.A.3.1.1 |
| CAZyme | MGYG000003183_50 | MGYG000003183_50_2 | 2089 | 3531 | - | GH1 |
| TF | MGYG000003183_50 | MGYG000003183_50_3 | 3873 | 4910 | + | LacI |
| CAZyme | MGYG000003183_50 | MGYG000003183_50_4 | 5172 | 6611 | - | GH1 |
| TC | MGYG000003183_50 | MGYG000003183_50_5 | 6678 | 8453 | - | 4.A.3.1.1 |
| TF | MGYG000003183_50 | MGYG000003183_50_6 | 8781 | 9815 | + | LacI |
| TC | MGYG000003183_50 | MGYG000003183_50_7 | 10030 | 10368 | + | 4.A.3.1.2 |
Gene ID: MGYG000003183_50_1
Type: TC
Location: 152 - 1912 (-)
Type: TC
Location: 152 - 1912 (-)
Gene ID: MGYG000003183_50_2
Type: CAZyme
Location: 2089 - 3531 (-)
Type: CAZyme
Location: 2089 - 3531 (-)
Gene ID: MGYG000003183_50_3
Type: TF
Location: 3873 - 4910 (+)
Type: TF
Location: 3873 - 4910 (+)
Gene ID: MGYG000003183_50_4
Type: CAZyme
Location: 5172 - 6611 (-)
Type: CAZyme
Location: 5172 - 6611 (-)
Gene ID: MGYG000003183_50_5
Type: TC
Location: 6678 - 8453 (-)
Type: TC
Location: 6678 - 8453 (-)
Gene ID: MGYG000003183_50_6
Type: TF
Location: 8781 - 9815 (+)
Type: TF
Location: 8781 - 9815 (+)
Gene ID: MGYG000003183_50_7
Type: TC
Location: 10030 - 10368 (+)
Type: TC
Location: 10030 - 10368 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003183_50_3 | vegetarian > omnivore | 1.01190 | 0.03181 |