Cluster: MGYG000003180_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003180
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003180_16 | MGYG000003180_16_3 | 2360 | 3919 | + | 2.A.2.5.1 |
| CAZyme | MGYG000003180_16 | MGYG000003180_16_4 | 4034 | 5629 | + | GH28 |
| peptidase | MGYG000003180_16 | MGYG000003180_16_5 | 5734 | 6543 | + | S09.UPW |
| CAZyme | MGYG000003180_16 | MGYG000003180_16_6 | 6540 | 8702 | + | CE19 | CE8 |
| pfam | MGYG000003180_16 | MGYG000003180_16_7 | 8781 | 9452 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | MGYG000003180_16 | MGYG000003180_16_8 | 9560 | 10798 | + | GH105 |
Gene ID: MGYG000003180_16_3
Type: TC
Location: 2360 - 3919 (+)
Type: TC
Location: 2360 - 3919 (+)
Gene ID: MGYG000003180_16_4
Type: CAZyme
Location: 4034 - 5629 (+)
Type: CAZyme
Location: 4034 - 5629 (+)
Gene ID: MGYG000003180_16_5
Type: peptidase
Location: 5734 - 6543 (+)
Type: peptidase
Location: 5734 - 6543 (+)
Gene ID: MGYG000003180_16_6
Type: CAZyme
Location: 6540 - 8702 (+)
Type: CAZyme
Location: 6540 - 8702 (+)
Gene ID: MGYG000003180_16_7
Type: pfam
Location: 8781 - 9452 (+)
Type: pfam
Location: 8781 - 9452 (+)
Gene ID: MGYG000003180_16_8
Type: CAZyme
Location: 9560 - 10798 (+)
Type: CAZyme
Location: 9560 - 10798 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900544065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.