Cluster: MGYG000003174_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003174
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003174_56 | MGYG000003174_56_10 | 10447 | 13047 | - | GH106 |
| TF | MGYG000003174_56 | MGYG000003174_56_11 | 13163 | 14170 | + | HTH_AraC |
| CAZyme | MGYG000003174_56 | MGYG000003174_56_12 | 14343 | 15791 | + | GH1 |
| TC | MGYG000003174_56 | MGYG000003174_56_13 | 16059 | 16595 | + | 4.A.1.2.6 |
Gene ID: MGYG000003174_56_10
Type: CAZyme
Location: 10447 - 13047 (-)
Type: CAZyme
Location: 10447 - 13047 (-)
Gene ID: MGYG000003174_56_11
Type: TF
Location: 13163 - 14170 (+)
Type: TF
Location: 13163 - 14170 (+)
Gene ID: MGYG000003174_56_12
Type: CAZyme
Location: 14343 - 15791 (+)
Type: CAZyme
Location: 14343 - 15791 (+)
Gene ID: MGYG000003174_56_13
Type: TC
Location: 16059 - 16595 (+)
Type: TC
Location: 16059 - 16595 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900542125
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.