Cluster: MGYG000003139_CGC11
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: MGYG000003139
- CGC Family ID: CGCFAM_00684
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003139_15 | MGYG000003139_15_19 | 22386 | 24260 | + | 9.B.18.2.1 |
| CAZyme | MGYG000003139_15 | MGYG000003139_15_20 | 24280 | 25485 | + | GT4 |
| pfam | MGYG000003139_15 | MGYG000003139_15_21 | 25575 | 26894 | + | UDPG_MGDP_dh | NAD_binding_2 | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | MGYG000003139_15 | MGYG000003139_15_22 | 26952 | 28058 | + | GH177 |
| pfam | MGYG000003139_15 | MGYG000003139_15_23 | 28131 | 28871 | + | Hexapep | Hexapep | Hexapep_2 | Hexapep_2 | Hexapep_2 |
| CAZyme | MGYG000003139_15 | MGYG000003139_15_24 | 28900 | 30006 | + | GT4 |
| TC | MGYG000003139_15 | MGYG000003139_15_25 | 30024 | 31568 | + | 2.A.66.4.7 |
| STP | MGYG000003139_15 | MGYG000003139_15_26 | 31584 | 32930 | + | SBP_bac_1 |
| pfam | MGYG000003139_15 | MGYG000003139_15_27 | 32945 | 34405 | + | Wzy_C |
| CAZyme | MGYG000003139_15 | MGYG000003139_15_28 | 34402 | 35433 | + | GT2 |
| pfam | MGYG000003139_15 | MGYG000003139_15_29 | 35540 | 36784 | + | Wzy_C |
| CAZyme | MGYG000003139_15 | MGYG000003139_15_30 | 36771 | 37883 | + | GT4 |
| TC | MGYG000003139_15 | MGYG000003139_15_31 | 37902 | 39458 | + | 2.A.66.4.7 |
| TC | MGYG000003139_15 | MGYG000003139_15_32 | 39473 | 40126 | + | 9.B.18.1.2 |
| CAZyme | MGYG000003139_15 | MGYG000003139_15_33 | 40141 | 40848 | + | GT26 |
| CAZyme | MGYG000003139_15 | MGYG000003139_15_34 | 40899 | 41876 | - | CE4 |
Gene ID: MGYG000003139_15_19
Type: TC
Location: 22386 - 24260 (+)
Type: TC
Location: 22386 - 24260 (+)
Gene ID: MGYG000003139_15_20
Type: CAZyme
Location: 24280 - 25485 (+)
Type: CAZyme
Location: 24280 - 25485 (+)
Gene ID: MGYG000003139_15_21
Type: pfam
Location: 25575 - 26894 (+)
Type: pfam
Location: 25575 - 26894 (+)
Gene ID: MGYG000003139_15_22
Type: CAZyme
Location: 26952 - 28058 (+)
Type: CAZyme
Location: 26952 - 28058 (+)
Gene ID: MGYG000003139_15_23
Type: pfam
Location: 28131 - 28871 (+)
Type: pfam
Location: 28131 - 28871 (+)
Gene ID: MGYG000003139_15_24
Type: CAZyme
Location: 28900 - 30006 (+)
Type: CAZyme
Location: 28900 - 30006 (+)
Gene ID: MGYG000003139_15_25
Type: TC
Location: 30024 - 31568 (+)
Type: TC
Location: 30024 - 31568 (+)
Gene ID: MGYG000003139_15_26
Type: STP
Location: 31584 - 32930 (+)
Type: STP
Location: 31584 - 32930 (+)
Gene ID: MGYG000003139_15_27
Type: pfam
Location: 32945 - 34405 (+)
Type: pfam
Location: 32945 - 34405 (+)
Gene ID: MGYG000003139_15_28
Type: CAZyme
Location: 34402 - 35433 (+)
Type: CAZyme
Location: 34402 - 35433 (+)
Gene ID: MGYG000003139_15_29
Type: pfam
Location: 35540 - 36784 (+)
Type: pfam
Location: 35540 - 36784 (+)
Gene ID: MGYG000003139_15_30
Type: CAZyme
Location: 36771 - 37883 (+)
Type: CAZyme
Location: 36771 - 37883 (+)
Gene ID: MGYG000003139_15_31
Type: TC
Location: 37902 - 39458 (+)
Type: TC
Location: 37902 - 39458 (+)
Gene ID: MGYG000003139_15_32
Type: TC
Location: 39473 - 40126 (+)
Type: TC
Location: 39473 - 40126 (+)
Gene ID: MGYG000003139_15_33
Type: CAZyme
Location: 40141 - 40848 (+)
Type: CAZyme
Location: 40141 - 40848 (+)
Gene ID: MGYG000003139_15_34
Type: CAZyme
Location: 40899 - 41876 (-)
Type: CAZyme
Location: 40899 - 41876 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium_G
Species
Clostridium_G cochlearium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.