Cluster: MGYG000003137_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003137
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003137_1 | MGYG000003137_1_419 | 486418 | 487095 | - | 9.B.18.1.2 |
| NULL(UNKNOWN) | MGYG000003137_1 | MGYG000003137_1_420 | 487906 | 488625 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003137_1 | MGYG000003137_1_421 | 488634 | 490907 | - | 8.A.3.1.1 |
| NULL(UNKNOWN) | MGYG000003137_1 | MGYG000003137_1_422 | 490946 | 491572 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000003137_1 | MGYG000003137_1_423 | 491950 | 492660 | + | Metallophos |
| CAZyme | MGYG000003137_1 | MGYG000003137_1_424 | 492676 | 493818 | - | GT4 |
| pfam | MGYG000003137_1 | MGYG000003137_1_425 | 494185 | 495168 | + | Glycos_transf_2 |
| NULL(UNKNOWN) | MGYG000003137_1 | MGYG000003137_1_426 | 495275 | 496696 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003137_1 | MGYG000003137_1_427 | 496796 | 498628 | + | GH39 |
| STP | MGYG000003137_1 | MGYG000003137_1_428 | 498829 | 499467 | + | PIG-L |
| CAZyme | MGYG000003137_1 | MGYG000003137_1_429 | 499545 | 500639 | + | GT4 |
| pfam | MGYG000003137_1 | MGYG000003137_1_430 | 500798 | 501682 | + | Glyco_tranf_2_4 |
| TC | MGYG000003137_1 | MGYG000003137_1_431 | 501815 | 503335 | + | 2.A.66.2.23 |
Gene ID: MGYG000003137_1_419
Type: TC
Location: 486418 - 487095 (-)
Type: TC
Location: 486418 - 487095 (-)
Gene ID: MGYG000003137_1_420
Type:
Location: 487906 - 488625 (-)
Type:
Location: 487906 - 488625 (-)
Gene ID: MGYG000003137_1_421
Type: TC
Location: 488634 - 490907 (-)
Type: TC
Location: 488634 - 490907 (-)
Gene ID: MGYG000003137_1_422
Type:
Location: 490946 - 491572 (-)
Type:
Location: 490946 - 491572 (-)
Gene ID: MGYG000003137_1_423
Type: pfam
Location: 491950 - 492660 (+)
Type: pfam
Location: 491950 - 492660 (+)
Gene ID: MGYG000003137_1_424
Type: CAZyme
Location: 492676 - 493818 (-)
Type: CAZyme
Location: 492676 - 493818 (-)
Gene ID: MGYG000003137_1_425
Type: pfam
Location: 494185 - 495168 (+)
Type: pfam
Location: 494185 - 495168 (+)
Gene ID: MGYG000003137_1_426
Type:
Location: 495275 - 496696 (+)
Type:
Location: 495275 - 496696 (+)
Gene ID: MGYG000003137_1_427
Type: CAZyme
Location: 496796 - 498628 (+)
Type: CAZyme
Location: 496796 - 498628 (+)
Gene ID: MGYG000003137_1_428
Type: STP
Location: 498829 - 499467 (+)
Type: STP
Location: 498829 - 499467 (+)
Gene ID: MGYG000003137_1_429
Type: CAZyme
Location: 499545 - 500639 (+)
Type: CAZyme
Location: 499545 - 500639 (+)
Gene ID: MGYG000003137_1_430
Type: pfam
Location: 500798 - 501682 (+)
Type: pfam
Location: 500798 - 501682 (+)
Gene ID: MGYG000003137_1_431
Type: TC
Location: 501815 - 503335 (+)
Type: TC
Location: 501815 - 503335 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Xanthobacteraceae
Genus
Bradyrhizobium
Species
Bradyrhizobium denitrificans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.