Cluster: MGYG000003137_CGC21
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003137
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003137_13 | MGYG000003137_13_35 | 36469 | 37848 | - | GH103 |
| pfam | MGYG000003137_13 | MGYG000003137_13_36 | 38080 | 38961 | + | NTP_transferase |
| TC | MGYG000003137_13 | MGYG000003137_13_37 | 39004 | 40512 | - | 9.B.34.1.4 |
| pfam | MGYG000003137_13 | MGYG000003137_13_38 | 40653 | 40910 | + | DUF7662 |
| TC | MGYG000003137_13 | MGYG000003137_13_39 | 41052 | 42845 | + | 3.A.1.5.27 |
| TC | MGYG000003137_13 | MGYG000003137_13_40 | 43110 | 44903 | + | 3.A.1.5.20 |
| TC | MGYG000003137_13 | MGYG000003137_13_41 | 44947 | 45906 | + | 3.A.1.5.20 |
| TC | MGYG000003137_13 | MGYG000003137_13_42 | 45872 | 46813 | + | 3.A.1.5.20 |
| TC | MGYG000003137_13 | MGYG000003137_13_43 | 46813 | 47811 | + | 3.A.1.5.12 |
| TC | MGYG000003137_13 | MGYG000003137_13_44 | 47811 | 48809 | + | 3.A.1.5.36 |
| TC | MGYG000003137_13 | MGYG000003137_13_45 | 48825 | 50810 | - | 1.B.52.2.1 |
| pfam | MGYG000003137_13 | MGYG000003137_13_46 | 51173 | 53026 | - | AMP-binding |
| TF | MGYG000003137_13 | MGYG000003137_13_47 | 53306 | 53785 | + | MarR |
| TC | MGYG000003137_13 | MGYG000003137_13_48 | 53823 | 56699 | - | 9.B.34.1.2 |
Gene ID: MGYG000003137_13_35
Type: CAZyme
Location: 36469 - 37848 (-)
Type: CAZyme
Location: 36469 - 37848 (-)
Gene ID: MGYG000003137_13_36
Type: pfam
Location: 38080 - 38961 (+)
Type: pfam
Location: 38080 - 38961 (+)
Gene ID: MGYG000003137_13_37
Type: TC
Location: 39004 - 40512 (-)
Type: TC
Location: 39004 - 40512 (-)
Gene ID: MGYG000003137_13_38
Type: pfam
Location: 40653 - 40910 (+)
Type: pfam
Location: 40653 - 40910 (+)
Gene ID: MGYG000003137_13_39
Type: TC
Location: 41052 - 42845 (+)
Type: TC
Location: 41052 - 42845 (+)
Gene ID: MGYG000003137_13_40
Type: TC
Location: 43110 - 44903 (+)
Type: TC
Location: 43110 - 44903 (+)
Gene ID: MGYG000003137_13_41
Type: TC
Location: 44947 - 45906 (+)
Type: TC
Location: 44947 - 45906 (+)
Gene ID: MGYG000003137_13_42
Type: TC
Location: 45872 - 46813 (+)
Type: TC
Location: 45872 - 46813 (+)
Gene ID: MGYG000003137_13_43
Type: TC
Location: 46813 - 47811 (+)
Type: TC
Location: 46813 - 47811 (+)
Gene ID: MGYG000003137_13_44
Type: TC
Location: 47811 - 48809 (+)
Type: TC
Location: 47811 - 48809 (+)
Gene ID: MGYG000003137_13_45
Type: TC
Location: 48825 - 50810 (-)
Type: TC
Location: 48825 - 50810 (-)
Gene ID: MGYG000003137_13_46
Type: pfam
Location: 51173 - 53026 (-)
Type: pfam
Location: 51173 - 53026 (-)
Gene ID: MGYG000003137_13_47
Type: TF
Location: 53306 - 53785 (+)
Type: TF
Location: 53306 - 53785 (+)
Gene ID: MGYG000003137_13_48
Type: TC
Location: 53823 - 56699 (-)
Type: TC
Location: 53823 - 56699 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Xanthobacteraceae
Genus
Bradyrhizobium
Species
Bradyrhizobium denitrificans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.