Cluster: MGYG000003137_CGC19
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003137
- CGC Family ID: CGCFAM_04710
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003137_12 | MGYG000003137_12_105 | 116120 | 117757 | + | 3.A.1.5.4 |
| TC | MGYG000003137_12 | MGYG000003137_12_106 | 117762 | 118736 | + | 3.A.1.5.37 |
| TC | MGYG000003137_12 | MGYG000003137_12_107 | 118733 | 119725 | + | 3.A.1.5.20 |
| TC | MGYG000003137_12 | MGYG000003137_12_108 | 119725 | 120654 | + | 3.A.1.5.4 |
| TC | MGYG000003137_12 | MGYG000003137_12_109 | 120651 | 121508 | + | 3.A.1.5.4 |
| NULL(UNKNOWN) | MGYG000003137_12 | MGYG000003137_12_110 | 121516 | 121704 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | MGYG000003137_12 | MGYG000003137_12_111 | 122121 | 122315 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003137_12 | MGYG000003137_12_112 | 122681 | 124168 | - | 3.A.1.5.27 |
| TC | MGYG000003137_12 | MGYG000003137_12_113 | 124203 | 125255 | - | 3.A.1.5.39 |
| TC | MGYG000003137_12 | MGYG000003137_12_114 | 125252 | 126262 | - | 3.A.1.5.37 |
| TC | MGYG000003137_12 | MGYG000003137_12_115 | 126259 | 127053 | - | 3.A.1.5.11 |
| TC | MGYG000003137_12 | MGYG000003137_12_116 | 127140 | 128150 | - | 3.A.1.5.11 |
| CAZyme | MGYG000003137_12 | MGYG000003137_12_117 | 128298 | 129650 | + | GH1 |
Gene ID: MGYG000003137_12_105
Type: TC
Location: 116120 - 117757 (+)
Type: TC
Location: 116120 - 117757 (+)
Gene ID: MGYG000003137_12_106
Type: TC
Location: 117762 - 118736 (+)
Type: TC
Location: 117762 - 118736 (+)
Gene ID: MGYG000003137_12_107
Type: TC
Location: 118733 - 119725 (+)
Type: TC
Location: 118733 - 119725 (+)
Gene ID: MGYG000003137_12_108
Type: TC
Location: 119725 - 120654 (+)
Type: TC
Location: 119725 - 120654 (+)
Gene ID: MGYG000003137_12_109
Type: TC
Location: 120651 - 121508 (+)
Type: TC
Location: 120651 - 121508 (+)
Gene ID: MGYG000003137_12_110
Type:
Location: 121516 - 121704 (-)
Type:
Location: 121516 - 121704 (-)
Gene ID: MGYG000003137_12_111
Type:
Location: 122121 - 122315 (+)
Type:
Location: 122121 - 122315 (+)
Gene ID: MGYG000003137_12_112
Type: TC
Location: 122681 - 124168 (-)
Type: TC
Location: 122681 - 124168 (-)
Gene ID: MGYG000003137_12_113
Type: TC
Location: 124203 - 125255 (-)
Type: TC
Location: 124203 - 125255 (-)
Gene ID: MGYG000003137_12_114
Type: TC
Location: 125252 - 126262 (-)
Type: TC
Location: 125252 - 126262 (-)
Gene ID: MGYG000003137_12_115
Type: TC
Location: 126259 - 127053 (-)
Type: TC
Location: 126259 - 127053 (-)
Gene ID: MGYG000003137_12_116
Type: TC
Location: 127140 - 128150 (-)
Type: TC
Location: 127140 - 128150 (-)
Gene ID: MGYG000003137_12_117
Type: CAZyme
Location: 128298 - 129650 (+)
Type: CAZyme
Location: 128298 - 129650 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhizobiales
Family
Xanthobacteraceae
Genus
Bradyrhizobium
Species
Bradyrhizobium denitrificans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.