Cluster: MGYG000003122_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003122
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003122_19 | MGYG000003122_19_2 | 586 | 2466 | + | GT2 |
| pfam | MGYG000003122_19 | MGYG000003122_19_3 | 2566 | 3753 | + | LicD |
| CAZyme | MGYG000003122_19 | MGYG000003122_19_4 | 3786 | 5627 | + | GT2 |
| CAZyme | MGYG000003122_19 | MGYG000003122_19_5 | 5659 | 6588 | - | GT81 |
| TC | MGYG000003122_19 | MGYG000003122_19_6 | 6750 | 7595 | + | 3.A.1.103.6 |
| TC | MGYG000003122_19 | MGYG000003122_19_7 | 7608 | 8375 | + | 3.A.1.103.1 |
Gene ID: MGYG000003122_19_2
Type: CAZyme
Location: 586 - 2466 (+)
Type: CAZyme
Location: 586 - 2466 (+)
Gene ID: MGYG000003122_19_3
Type: pfam
Location: 2566 - 3753 (+)
Type: pfam
Location: 2566 - 3753 (+)
Gene ID: MGYG000003122_19_4
Type: CAZyme
Location: 3786 - 5627 (+)
Type: CAZyme
Location: 3786 - 5627 (+)
Gene ID: MGYG000003122_19_5
Type: CAZyme
Location: 5659 - 6588 (-)
Type: CAZyme
Location: 5659 - 6588 (-)
Gene ID: MGYG000003122_19_6
Type: TC
Location: 6750 - 7595 (+)
Type: TC
Location: 6750 - 7595 (+)
Gene ID: MGYG000003122_19_7
Type: TC
Location: 7608 - 8375 (+)
Type: TC
Location: 7608 - 8375 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003122_19_2 | vegan > omnivore | 10.19658 | 0.00701 |
| MGYG000003122_19_3 | vegan > omnivore | 17.91271 | 0.00701 |
| MGYG000003122_19_4 | vegan > omnivore | 17.72508 | 0.00701 |
| MGYG000003122_19_4 | vegetarian > omnivore | 12.82216 | 0.04668 |
| MGYG000003122_19_5 | vegan > omnivore | 1.26847 | 0.00701 |
| MGYG000003122_19_6 | vegan > omnivore | 1.72221 | 0.00701 |