Cluster: MGYG000003121_CGC5
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000003121
- CGC Family ID: CGCFAM_03858
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003121_5 | MGYG000003121_5_12 | 16167 | 17657 | + | GH77 |
| CAZyme | MGYG000003121_5 | MGYG000003121_5_13 | 17659 | 19917 | + | GT35 |
| pfam | MGYG000003121_5 | MGYG000003121_5_14 | 19943 | 20737 | + | Exo_endo_phos |
| TC | MGYG000003121_5 | MGYG000003121_5_15 | 20757 | 22343 | + | 4.A.1.1.16 |
| TC | MGYG000003121_5 | MGYG000003121_5_16 | 22594 | 23424 | - | 3.A.1.24.5 |
| TC | MGYG000003121_5 | MGYG000003121_5_17 | 23522 | 24346 | - | 3.A.1.24.5 |
| TC | MGYG000003121_5 | MGYG000003121_5_18 | 24351 | 25022 | - | 3.A.1.24.5 |
| TC | MGYG000003121_5 | MGYG000003121_5_19 | 25015 | 25749 | - | 3.A.1.24.2 |
| TF | MGYG000003121_5 | MGYG000003121_5_20 | 26179 | 27183 | + | LacI |
| pfam | MGYG000003121_5 | MGYG000003121_5_21 | 27186 | 27983 | + | S6PP | Hydrolase_3 |
| TC | MGYG000003121_5 | MGYG000003121_5_22 | 28118 | 29641 | - | 2.A.49.5.5 |
| STP | MGYG000003121_5 | MGYG000003121_5_23 | 29790 | 30518 | + | Rhodanese |
| CAZyme | MGYG000003121_5 | MGYG000003121_5_24 | 30732 | 31934 | + | GT4 |
| sulfatase | MGYG000003121_5 | MGYG000003121_5_25 | 32073 | 34712 | + | S1_2 |
| pfam | MGYG000003121_5 | MGYG000003121_5_26 | 35067 | 36326 | + | ELFV_dehydrog | ELFV_dehydrog_N |
| CAZyme | MGYG000003121_5 | MGYG000003121_5_27 | 36380 | 37207 | - | CE7 |
| CAZyme | MGYG000003121_5 | MGYG000003121_5_28 | 37220 | 38143 | - | CE7 |
| TC | MGYG000003121_5 | MGYG000003121_5_29 | 38344 | 39645 | + | 9.A.40.2.1 |
Gene ID: MGYG000003121_5_12
Type: CAZyme
Location: 16167 - 17657 (+)
Type: CAZyme
Location: 16167 - 17657 (+)
Gene ID: MGYG000003121_5_13
Type: CAZyme
Location: 17659 - 19917 (+)
Type: CAZyme
Location: 17659 - 19917 (+)
Gene ID: MGYG000003121_5_14
Type: pfam
Location: 19943 - 20737 (+)
Type: pfam
Location: 19943 - 20737 (+)
Gene ID: MGYG000003121_5_15
Type: TC
Location: 20757 - 22343 (+)
Type: TC
Location: 20757 - 22343 (+)
Gene ID: MGYG000003121_5_16
Type: TC
Location: 22594 - 23424 (-)
Type: TC
Location: 22594 - 23424 (-)
Gene ID: MGYG000003121_5_17
Type: TC
Location: 23522 - 24346 (-)
Type: TC
Location: 23522 - 24346 (-)
Gene ID: MGYG000003121_5_18
Type: TC
Location: 24351 - 25022 (-)
Type: TC
Location: 24351 - 25022 (-)
Gene ID: MGYG000003121_5_19
Type: TC
Location: 25015 - 25749 (-)
Type: TC
Location: 25015 - 25749 (-)
Gene ID: MGYG000003121_5_20
Type: TF
Location: 26179 - 27183 (+)
Type: TF
Location: 26179 - 27183 (+)
Gene ID: MGYG000003121_5_21
Type: pfam
Location: 27186 - 27983 (+)
Type: pfam
Location: 27186 - 27983 (+)
Gene ID: MGYG000003121_5_22
Type: TC
Location: 28118 - 29641 (-)
Type: TC
Location: 28118 - 29641 (-)
Gene ID: MGYG000003121_5_23
Type: STP
Location: 29790 - 30518 (+)
Type: STP
Location: 29790 - 30518 (+)
Gene ID: MGYG000003121_5_24
Type: CAZyme
Location: 30732 - 31934 (+)
Type: CAZyme
Location: 30732 - 31934 (+)
Gene ID: MGYG000003121_5_25
Type: sulfatase
Location: 32073 - 34712 (+)
Type: sulfatase
Location: 32073 - 34712 (+)
Gene ID: MGYG000003121_5_26
Type: pfam
Location: 35067 - 36326 (+)
Type: pfam
Location: 35067 - 36326 (+)
Gene ID: MGYG000003121_5_27
Type: CAZyme
Location: 36380 - 37207 (-)
Type: CAZyme
Location: 36380 - 37207 (-)
Gene ID: MGYG000003121_5_28
Type: CAZyme
Location: 37220 - 38143 (-)
Type: CAZyme
Location: 37220 - 38143 (-)
Gene ID: MGYG000003121_5_29
Type: TC
Location: 38344 - 39645 (+)
Type: TC
Location: 38344 - 39645 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Gemellaceae
Genus
Gemella
Species
Gemella sp002871655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.