Cluster: MGYG000003118_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003118
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003118_2 | MGYG000003118_2_47 | 44224 | 46068 | - | 3.A.1.106.2 |
| TF | MGYG000003118_2 | MGYG000003118_2_48 | 46146 | 47036 | - | HTH_AraC | HTH_AraC |
| pfam | MGYG000003118_2 | MGYG000003118_2_49 | 47140 | 47484 | + | CMD |
| CAZyme | MGYG000003118_2 | MGYG000003118_2_50 | 47556 | 48611 | - | GT9 |
Gene ID: MGYG000003118_2_47
Type: TC
Location: 44224 - 46068 (-)
Type: TC
Location: 44224 - 46068 (-)
Gene ID: MGYG000003118_2_48
Type: TF
Location: 46146 - 47036 (-)
Type: TF
Location: 46146 - 47036 (-)
Gene ID: MGYG000003118_2_49
Type: pfam
Location: 47140 - 47484 (+)
Type: pfam
Location: 47140 - 47484 (+)
Gene ID: MGYG000003118_2_50
Type: CAZyme
Location: 47556 - 48611 (-)
Type: CAZyme
Location: 47556 - 48611 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp030405845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003118_2_47 | vegetarian > omnivore | 1.84308 | 0.01587 |
| MGYG000003118_2_47 | vegetarian > vegan | 1.25349 | 0.01135 |
| MGYG000003118_2_48 | vegetarian > vegan | 1.21082 | 0.01135 |
| MGYG000003118_2_49 | vegan > omnivore | 1.44395 | 0.00581 |
| MGYG000003118_2_49 | vegetarian > omnivore | 1.28513 | 0.01587 |
| MGYG000003118_2_50 | vegetarian > omnivore | 1.22790 | 0.01587 |
| MGYG000003118_2_50 | vegetarian > vegan | 1.46498 | 0.01135 |