Cluster: MGYG000003118_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003118
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003118_10 | MGYG000003118_10_6 | 4162 | 4467 | + | 9.B.21.2.1 |
| TC | MGYG000003118_10 | MGYG000003118_10_7 | 4467 | 6332 | + | 2.A.16.2.2 |
| pfam | MGYG000003118_10 | MGYG000003118_10_8 | 6374 | 7915 | - | PFL-like | YjjI-like |
| TC | MGYG000003118_10 | MGYG000003118_10_9 | 8106 | 8771 | + | 2.A.115.2.7 |
| CAZyme | MGYG000003118_10 | MGYG000003118_10_10 | 8721 | 9749 | - | GT9 |
Gene ID: MGYG000003118_10_6
Type: TC
Location: 4162 - 4467 (+)
Type: TC
Location: 4162 - 4467 (+)
Gene ID: MGYG000003118_10_7
Type: TC
Location: 4467 - 6332 (+)
Type: TC
Location: 4467 - 6332 (+)
Gene ID: MGYG000003118_10_8
Type: pfam
Location: 6374 - 7915 (-)
Type: pfam
Location: 6374 - 7915 (-)
Gene ID: MGYG000003118_10_9
Type: TC
Location: 8106 - 8771 (+)
Type: TC
Location: 8106 - 8771 (+)
Gene ID: MGYG000003118_10_10
Type: CAZyme
Location: 8721 - 9749 (-)
Type: CAZyme
Location: 8721 - 9749 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp030405845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003118_10_9 | vegan > omnivore | 1.39824 | 0.00581 |
| MGYG000003118_10_9 | vegetarian > omnivore | 1.64605 | 0.01587 |
| MGYG000003118_10_10 | vegan > omnivore | 1.35875 | 0.00581 |
| MGYG000003118_10_10 | vegetarian > omnivore | 1.03785 | 0.01587 |