Cluster: MGYG000003118_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003118
- CGC Family ID: CGCFAM_00701
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003118_1 | MGYG000003118_1_70 | 69304 | 70530 | - | 2.A.1.12.1 |
| TF | MGYG000003118_1 | MGYG000003118_1_71 | 70704 | 71414 | + | GntR |
| pfam | MGYG000003118_1 | MGYG000003118_1_72 | 71404 | 72477 | + | GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3 |
| CAZyme | MGYG000003118_1 | MGYG000003118_1_73 | 72488 | 73594 | + | GH177 |
| NULL(UNKNOWN) | MGYG000003118_1 | MGYG000003118_1_74 | 73680 | 74234 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000003118_1 | MGYG000003118_1_75 | 74299 | 74931 | - | PNPOx_N | PNP_phzG_C | Pyridox_oxase_2 |
| TC | MGYG000003118_1 | MGYG000003118_1_76 | 74998 | 76644 | - | 3.A.1.5.27 |
| TC | MGYG000003118_1 | MGYG000003118_1_77 | 76778 | 78187 | - | 2.A.1.3.51 |
Gene ID: MGYG000003118_1_70
Type: TC
Location: 69304 - 70530 (-)
Type: TC
Location: 69304 - 70530 (-)
Gene ID: MGYG000003118_1_71
Type: TF
Location: 70704 - 71414 (+)
Type: TF
Location: 70704 - 71414 (+)
Gene ID: MGYG000003118_1_72
Type: pfam
Location: 71404 - 72477 (+)
Type: pfam
Location: 71404 - 72477 (+)
Gene ID: MGYG000003118_1_73
Type: CAZyme
Location: 72488 - 73594 (+)
Type: CAZyme
Location: 72488 - 73594 (+)
Gene ID: MGYG000003118_1_74
Type:
Location: 73680 - 74234 (+)
Type:
Location: 73680 - 74234 (+)
Gene ID: MGYG000003118_1_75
Type: pfam
Location: 74299 - 74931 (-)
Type: pfam
Location: 74299 - 74931 (-)
Gene ID: MGYG000003118_1_76
Type: TC
Location: 74998 - 76644 (-)
Type: TC
Location: 74998 - 76644 (-)
Gene ID: MGYG000003118_1_77
Type: TC
Location: 76778 - 78187 (-)
Type: TC
Location: 76778 - 78187 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp030405845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003118_1_75 | vegetarian > omnivore | 1.24421 | 0.01587 |
| MGYG000003118_1_76 | vegan > omnivore | 1.23309 | 0.00581 |
| MGYG000003118_1_77 | vegetarian > vegan | 1.40835 | 0.01135 |