Cluster: MGYG000003116_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003116
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003116_1 | MGYG000003116_1_228 | 246452 | 247624 | + | 2.A.37.3.3 |
| NULL(UNKNOWN) | MGYG000003116_1 | MGYG000003116_1_229 | 247637 | 247987 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | MGYG000003116_1 | MGYG000003116_1_230 | 248442 | 248678 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003116_1 | MGYG000003116_1_231 | 248698 | 249591 | + | CE4 |
| pfam | MGYG000003116_1 | MGYG000003116_1_232 | 249882 | 251171 | - | DUF5050 |
| pfam | MGYG000003116_1 | MGYG000003116_1_233 | 251612 | 252028 | - | Flavodoxin_1 | Flavodoxin_3 | Flavodoxin_5 |
| TC | MGYG000003116_1 | MGYG000003116_1_234 | 252259 | 253680 | - | 2.A.66.1.32 |
| CAZyme | MGYG000003116_1 | MGYG000003116_1_235 | 254211 | 256277 | - | GH39 |
| pfam | MGYG000003116_1 | MGYG000003116_1_236 | 256746 | 258242 | - | FGGY_N | FGGY_C |
| TC | MGYG000003116_1 | MGYG000003116_1_237 | 258532 | 259236 | - | 1.A.8.2.1 |
| pfam | MGYG000003116_1 | MGYG000003116_1_238 | 259777 | 260097 | + | YbjQ_1 | YbjQ_2 |
| pfam | MGYG000003116_1 | MGYG000003116_1_239 | 260284 | 261360 | - | ABC2_membrane_2 |
| TC | MGYG000003116_1 | MGYG000003116_1_240 | 261344 | 262240 | - | 3.A.1.149.1 |
Gene ID: MGYG000003116_1_228
Type: TC
Location: 246452 - 247624 (+)
Type: TC
Location: 246452 - 247624 (+)
Gene ID: MGYG000003116_1_229
Type:
Location: 247637 - 247987 (+)
Type:
Location: 247637 - 247987 (+)
Gene ID: MGYG000003116_1_230
Type:
Location: 248442 - 248678 (+)
Type:
Location: 248442 - 248678 (+)
Gene ID: MGYG000003116_1_231
Type: CAZyme
Location: 248698 - 249591 (+)
Type: CAZyme
Location: 248698 - 249591 (+)
Gene ID: MGYG000003116_1_232
Type: pfam
Location: 249882 - 251171 (-)
Type: pfam
Location: 249882 - 251171 (-)
Gene ID: MGYG000003116_1_233
Type: pfam
Location: 251612 - 252028 (-)
Type: pfam
Location: 251612 - 252028 (-)
Gene ID: MGYG000003116_1_234
Type: TC
Location: 252259 - 253680 (-)
Type: TC
Location: 252259 - 253680 (-)
Gene ID: MGYG000003116_1_235
Type: CAZyme
Location: 254211 - 256277 (-)
Type: CAZyme
Location: 254211 - 256277 (-)
Gene ID: MGYG000003116_1_236
Type: pfam
Location: 256746 - 258242 (-)
Type: pfam
Location: 256746 - 258242 (-)
Gene ID: MGYG000003116_1_237
Type: TC
Location: 258532 - 259236 (-)
Type: TC
Location: 258532 - 259236 (-)
Gene ID: MGYG000003116_1_238
Type: pfam
Location: 259777 - 260097 (+)
Type: pfam
Location: 259777 - 260097 (+)
Gene ID: MGYG000003116_1_239
Type: pfam
Location: 260284 - 261360 (-)
Type: pfam
Location: 260284 - 261360 (-)
Gene ID: MGYG000003116_1_240
Type: TC
Location: 261344 - 262240 (-)
Type: TC
Location: 261344 - 262240 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium_F
Species
Clostridium_F tepidum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.