Cluster: MGYG000003107_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003107
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003107_4 | MGYG000003107_4_47 | 57300 | 57626 | + | 4.A.3.2.7 |
| TC | MGYG000003107_4 | MGYG000003107_4_48 | 57673 | 57966 | + | 4.A.3.2.6 |
| TC | MGYG000003107_4 | MGYG000003107_4_49 | 57976 | 58401 | + | 4.A.3.2.6 |
| TC | MGYG000003107_4 | MGYG000003107_4_50 | 58459 | 59325 | + | 4.A.3.1.1 |
| CAZyme | MGYG000003107_4 | MGYG000003107_4_51 | 59327 | 60781 | + | GH1 |
Gene ID: MGYG000003107_4_47
Type: TC
Location: 57300 - 57626 (+)
Type: TC
Location: 57300 - 57626 (+)
Gene ID: MGYG000003107_4_48
Type: TC
Location: 57673 - 57966 (+)
Type: TC
Location: 57673 - 57966 (+)
Gene ID: MGYG000003107_4_49
Type: TC
Location: 57976 - 58401 (+)
Type: TC
Location: 57976 - 58401 (+)
Gene ID: MGYG000003107_4_50
Type: TC
Location: 58459 - 59325 (+)
Type: TC
Location: 58459 - 59325 (+)
Gene ID: MGYG000003107_4_51
Type: CAZyme
Location: 59327 - 60781 (+)
Type: CAZyme
Location: 59327 - 60781 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003107_4_47 | vegetarian > vegan | 1.52127 | 0.01671 |
| MGYG000003107_4_48 | vegetarian > vegan | 2.28588 | 0.01671 |
| MGYG000003107_4_49 | vegetarian > vegan | 2.06089 | 0.01671 |
| MGYG000003107_4_50 | vegetarian > vegan | 1.99152 | 0.01671 |
| MGYG000003107_4_51 | vegetarian > vegan | 2.30117 | 0.01671 |