Cluster: MGYG000003079_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003079
- CGC Family ID: CGCFAM_00230
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003079_10 | MGYG000003079_10_26 | 35469 | 36794 | + | GH4 |
| TC | MGYG000003079_10 | MGYG000003079_10_27 | 36878 | 37633 | + | 4.A.1.1.13 |
| TC | MGYG000003079_10 | MGYG000003079_10_28 | 37718 | 38440 | + | 4.A.1.1.9 |
| TF | MGYG000003079_10 | MGYG000003079_10_29 | 38631 | 39431 | - | HTH_6 |
| TC | MGYG000003079_10 | MGYG000003079_10_30 | 39509 | 41089 | - | 4.A.1.1.14 |
| CAZyme | MGYG000003079_10 | MGYG000003079_10_31 | 41114 | 42439 | - | GH4 |
| TC | MGYG000003079_10 | MGYG000003079_10_32 | 42627 | 43856 | - | 2.A.1.2.25 |
Gene ID: MGYG000003079_10_26
Type: CAZyme
Location: 35469 - 36794 (+)
Type: CAZyme
Location: 35469 - 36794 (+)
Gene ID: MGYG000003079_10_27
Type: TC
Location: 36878 - 37633 (+)
Type: TC
Location: 36878 - 37633 (+)
Gene ID: MGYG000003079_10_28
Type: TC
Location: 37718 - 38440 (+)
Type: TC
Location: 37718 - 38440 (+)
Gene ID: MGYG000003079_10_29
Type: TF
Location: 38631 - 39431 (-)
Type: TF
Location: 38631 - 39431 (-)
Gene ID: MGYG000003079_10_30
Type: TC
Location: 39509 - 41089 (-)
Type: TC
Location: 39509 - 41089 (-)
Gene ID: MGYG000003079_10_31
Type: CAZyme
Location: 41114 - 42439 (-)
Type: CAZyme
Location: 41114 - 42439 (-)
Gene ID: MGYG000003079_10_32
Type: TC
Location: 42627 - 43856 (-)
Type: TC
Location: 42627 - 43856 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900539035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.