Cluster: MGYG000003079_CGC16
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003079
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003079_29 | MGYG000003079_29_5 | 3230 | 4447 | - | GT4 |
| pfam | MGYG000003079_29 | MGYG000003079_29_6 | 4460 | 5224 | - | BcrAD_BadFG |
| pfam | MGYG000003079_29 | MGYG000003079_29_7 | 5380 | 6543 | - | HGD-D |
| TC | MGYG000003079_29 | MGYG000003079_29_8 | 6620 | 7405 | - | 3.A.1.5.36 |
| TC | MGYG000003079_29 | MGYG000003079_29_9 | 7395 | 8390 | - | 3.A.1.5.37 |
| TC | MGYG000003079_29 | MGYG000003079_29_10 | 8394 | 9224 | - | 3.A.1.5.39 |
| TC | MGYG000003079_29 | MGYG000003079_29_11 | 9221 | 10174 | - | 3.A.1.5.39 |
| TC | MGYG000003079_29 | MGYG000003079_29_12 | 10263 | 11873 | - | 3.A.1.5.11 |
| pfam | MGYG000003079_29 | MGYG000003079_29_13 | 12058 | 13341 | - | HGD-D |
| TC | MGYG000003079_29 | MGYG000003079_29_14 | 13771 | 14841 | - | 3.A.1.1.3 |
| TC | MGYG000003079_29 | MGYG000003079_29_15 | 14845 | 16287 | - | 3.A.1.8.1 |
Gene ID: MGYG000003079_29_5
Type: CAZyme
Location: 3230 - 4447 (-)
Type: CAZyme
Location: 3230 - 4447 (-)
Gene ID: MGYG000003079_29_6
Type: pfam
Location: 4460 - 5224 (-)
Type: pfam
Location: 4460 - 5224 (-)
Gene ID: MGYG000003079_29_7
Type: pfam
Location: 5380 - 6543 (-)
Type: pfam
Location: 5380 - 6543 (-)
Gene ID: MGYG000003079_29_8
Type: TC
Location: 6620 - 7405 (-)
Type: TC
Location: 6620 - 7405 (-)
Gene ID: MGYG000003079_29_9
Type: TC
Location: 7395 - 8390 (-)
Type: TC
Location: 7395 - 8390 (-)
Gene ID: MGYG000003079_29_10
Type: TC
Location: 8394 - 9224 (-)
Type: TC
Location: 8394 - 9224 (-)
Gene ID: MGYG000003079_29_11
Type: TC
Location: 9221 - 10174 (-)
Type: TC
Location: 9221 - 10174 (-)
Gene ID: MGYG000003079_29_12
Type: TC
Location: 10263 - 11873 (-)
Type: TC
Location: 10263 - 11873 (-)
Gene ID: MGYG000003079_29_13
Type: pfam
Location: 12058 - 13341 (-)
Type: pfam
Location: 12058 - 13341 (-)
Gene ID: MGYG000003079_29_14
Type: TC
Location: 13771 - 14841 (-)
Type: TC
Location: 13771 - 14841 (-)
Gene ID: MGYG000003079_29_15
Type: TC
Location: 14845 - 16287 (-)
Type: TC
Location: 14845 - 16287 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900539035
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003079_29_5 | vegan > omnivore | 1.58072 | 0.01057 |
| MGYG000003079_29_8 | vegan > omnivore | 2.68117 | 0.01057 |
| MGYG000003079_29_9 | vegan > omnivore | 1.05504 | 0.01057 |
| MGYG000003079_29_10 | vegan > omnivore | 2.74331 | 0.01057 |
| MGYG000003079_29_10 | vegetarian > omnivore | 1.09551 | 0.02258 |
| MGYG000003079_29_11 | vegan > omnivore | 2.60141 | 0.01057 |
| MGYG000003079_29_11 | vegetarian > omnivore | 1.06554 | 0.02258 |
| MGYG000003079_29_12 | vegan > omnivore | 2.92059 | 0.01057 |