Cluster: MGYG000003075_CGC8
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003075
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003075_4 | MGYG000003075_4_56 | 55129 | 56550 | - | GH1 |
| TC | MGYG000003075_4 | MGYG000003075_4_57 | 56627 | 58405 | - | 4.A.3.1.1 |
| TF | MGYG000003075_4 | MGYG000003075_4_58 | 58681 | 59691 | + | LacI |
| TC | MGYG000003075_4 | MGYG000003075_4_59 | 59949 | 61709 | - | 4.A.3.1.1 |
| CAZyme | MGYG000003075_4 | MGYG000003075_4_60 | 61886 | 63328 | - | GH1 |
| TF | MGYG000003075_4 | MGYG000003075_4_61 | 63670 | 64707 | + | LacI |
| CAZyme | MGYG000003075_4 | MGYG000003075_4_62 | 64975 | 66414 | - | GH1 |
| TC | MGYG000003075_4 | MGYG000003075_4_63 | 66481 | 68256 | - | 4.A.3.1.1 |
| TF | MGYG000003075_4 | MGYG000003075_4_64 | 68614 | 69618 | + | LacI |
| TC | MGYG000003075_4 | MGYG000003075_4_65 | 69833 | 70171 | + | 4.A.3.1.2 |
Gene ID: MGYG000003075_4_56
Type: CAZyme
Location: 55129 - 56550 (-)
Type: CAZyme
Location: 55129 - 56550 (-)
Gene ID: MGYG000003075_4_57
Type: TC
Location: 56627 - 58405 (-)
Type: TC
Location: 56627 - 58405 (-)
Gene ID: MGYG000003075_4_58
Type: TF
Location: 58681 - 59691 (+)
Type: TF
Location: 58681 - 59691 (+)
Gene ID: MGYG000003075_4_59
Type: TC
Location: 59949 - 61709 (-)
Type: TC
Location: 59949 - 61709 (-)
Gene ID: MGYG000003075_4_60
Type: CAZyme
Location: 61886 - 63328 (-)
Type: CAZyme
Location: 61886 - 63328 (-)
Gene ID: MGYG000003075_4_61
Type: TF
Location: 63670 - 64707 (+)
Type: TF
Location: 63670 - 64707 (+)
Gene ID: MGYG000003075_4_62
Type: CAZyme
Location: 64975 - 66414 (-)
Type: CAZyme
Location: 64975 - 66414 (-)
Gene ID: MGYG000003075_4_63
Type: TC
Location: 66481 - 68256 (-)
Type: TC
Location: 66481 - 68256 (-)
Gene ID: MGYG000003075_4_64
Type: TF
Location: 68614 - 69618 (+)
Type: TF
Location: 68614 - 69618 (+)
Gene ID: MGYG000003075_4_65
Type: TC
Location: 69833 - 70171 (+)
Type: TC
Location: 69833 - 70171 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.