Cluster: MGYG000003075_CGC2
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003075
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003075_1 | MGYG000003075_1_160 | 174213 | 175694 | + | 3.A.1.8.1 |
| TC | MGYG000003075_1 | MGYG000003075_1_161 | 175698 | 176768 | + | 3.A.1.1.3 |
| pfam | MGYG000003075_1 | MGYG000003075_1_162 | 177198 | 178481 | + | HGD-D |
| TC | MGYG000003075_1 | MGYG000003075_1_163 | 178666 | 180276 | + | 3.A.1.5.11 |
| TC | MGYG000003075_1 | MGYG000003075_1_164 | 180365 | 181318 | + | 3.A.1.5.39 |
| TC | MGYG000003075_1 | MGYG000003075_1_165 | 181315 | 182145 | + | 3.A.1.5.39 |
| TC | MGYG000003075_1 | MGYG000003075_1_166 | 182149 | 183144 | + | 3.A.1.5.37 |
| TC | MGYG000003075_1 | MGYG000003075_1_167 | 183134 | 183919 | + | 3.A.1.5.36 |
| pfam | MGYG000003075_1 | MGYG000003075_1_168 | 183996 | 185159 | + | HGD-D |
| pfam | MGYG000003075_1 | MGYG000003075_1_169 | 185315 | 186079 | + | BcrAD_BadFG |
| CAZyme | MGYG000003075_1 | MGYG000003075_1_170 | 186092 | 187324 | + | GT4 |
Gene ID: MGYG000003075_1_160
Type: TC
Location: 174213 - 175694 (+)
Type: TC
Location: 174213 - 175694 (+)
Gene ID: MGYG000003075_1_161
Type: TC
Location: 175698 - 176768 (+)
Type: TC
Location: 175698 - 176768 (+)
Gene ID: MGYG000003075_1_162
Type: pfam
Location: 177198 - 178481 (+)
Type: pfam
Location: 177198 - 178481 (+)
Gene ID: MGYG000003075_1_163
Type: TC
Location: 178666 - 180276 (+)
Type: TC
Location: 178666 - 180276 (+)
Gene ID: MGYG000003075_1_164
Type: TC
Location: 180365 - 181318 (+)
Type: TC
Location: 180365 - 181318 (+)
Gene ID: MGYG000003075_1_165
Type: TC
Location: 181315 - 182145 (+)
Type: TC
Location: 181315 - 182145 (+)
Gene ID: MGYG000003075_1_166
Type: TC
Location: 182149 - 183144 (+)
Type: TC
Location: 182149 - 183144 (+)
Gene ID: MGYG000003075_1_167
Type: TC
Location: 183134 - 183919 (+)
Type: TC
Location: 183134 - 183919 (+)
Gene ID: MGYG000003075_1_168
Type: pfam
Location: 183996 - 185159 (+)
Type: pfam
Location: 183996 - 185159 (+)
Gene ID: MGYG000003075_1_169
Type: pfam
Location: 185315 - 186079 (+)
Type: pfam
Location: 185315 - 186079 (+)
Gene ID: MGYG000003075_1_170
Type: CAZyme
Location: 186092 - 187324 (+)
Type: CAZyme
Location: 186092 - 187324 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003075_1_163 | vegan > omnivore | 3.26093 | 0.01416 |
| MGYG000003075_1_164 | vegan > omnivore | 2.68123 | 0.01416 |
| MGYG000003075_1_165 | vegan > omnivore | 2.88093 | 0.01416 |
| MGYG000003075_1_166 | vegan > omnivore | 1.12870 | 0.01416 |
| MGYG000003075_1_167 | vegan > omnivore | 2.78883 | 0.01416 |