Cluster: MGYG000003069_CGC31
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000003069
- CGC Family ID: CGCFAM_09487
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003069_21 | MGYG000003069_21_6 | 4711 | 6318 | - | GH13_44 |
| pfam | MGYG000003069_21 | MGYG000003069_21_7 | 6711 | 7958 | + | SBP_bac_8 |
| TC | MGYG000003069_21 | MGYG000003069_21_8 | 7978 | 9378 | + | 3.A.1.1.27 |
| TC | MGYG000003069_21 | MGYG000003069_21_9 | 9375 | 10280 | + | 3.A.1.1.27 |
| CAZyme | MGYG000003069_21 | MGYG000003069_21_10 | 10409 | 12457 | + | GH13_14 |
| pfam | MGYG000003069_21 | MGYG000003069_21_11 | 12493 | 13281 | + | TraX |
| CAZyme | MGYG000003069_21 | MGYG000003069_21_12 | 13549 | 15798 | + | GH77 |
| pfam | MGYG000003069_21 | MGYG000003069_21_13 | 15895 | 17232 | - | AAA_14 | DUF4143 |
| CAZyme | MGYG000003069_21 | MGYG000003069_21_14 | 17556 | 19328 | + | GH13_30 |
| TF | MGYG000003069_21 | MGYG000003069_21_15 | 19522 | 20526 | - | LacI |
| STP | MGYG000003069_21 | MGYG000003069_21_16 | 21028 | 22416 | + | SBP_bac_1 |
| TC | MGYG000003069_21 | MGYG000003069_21_17 | 22432 | 23364 | + | 3.A.1.1.20 |
| TC | MGYG000003069_21 | MGYG000003069_21_18 | 23366 | 24193 | + | 3.A.1.1.36 |
| CAZyme | MGYG000003069_21 | MGYG000003069_21_19 | 24348 | 26900 | + | GH31_15 |
| pfam | MGYG000003069_21 | MGYG000003069_21_20 | 27319 | 29457 | + | Alk_phosphatase |
| TC | MGYG000003069_21 | MGYG000003069_21_21 | 29920 | 31785 | + | 1.A.33.1.4 |
Gene ID: MGYG000003069_21_6
Type: CAZyme
Location: 4711 - 6318 (-)
Type: CAZyme
Location: 4711 - 6318 (-)
Gene ID: MGYG000003069_21_7
Type: pfam
Location: 6711 - 7958 (+)
Type: pfam
Location: 6711 - 7958 (+)
Gene ID: MGYG000003069_21_8
Type: TC
Location: 7978 - 9378 (+)
Type: TC
Location: 7978 - 9378 (+)
Gene ID: MGYG000003069_21_9
Type: TC
Location: 9375 - 10280 (+)
Type: TC
Location: 9375 - 10280 (+)
Gene ID: MGYG000003069_21_10
Type: CAZyme
Location: 10409 - 12457 (+)
Type: CAZyme
Location: 10409 - 12457 (+)
Gene ID: MGYG000003069_21_11
Type: pfam
Location: 12493 - 13281 (+)
Type: pfam
Location: 12493 - 13281 (+)
Gene ID: MGYG000003069_21_12
Type: CAZyme
Location: 13549 - 15798 (+)
Type: CAZyme
Location: 13549 - 15798 (+)
Gene ID: MGYG000003069_21_13
Type: pfam
Location: 15895 - 17232 (-)
Type: pfam
Location: 15895 - 17232 (-)
Gene ID: MGYG000003069_21_14
Type: CAZyme
Location: 17556 - 19328 (+)
Type: CAZyme
Location: 17556 - 19328 (+)
Gene ID: MGYG000003069_21_15
Type: TF
Location: 19522 - 20526 (-)
Type: TF
Location: 19522 - 20526 (-)
Gene ID: MGYG000003069_21_16
Type: STP
Location: 21028 - 22416 (+)
Type: STP
Location: 21028 - 22416 (+)
Gene ID: MGYG000003069_21_17
Type: TC
Location: 22432 - 23364 (+)
Type: TC
Location: 22432 - 23364 (+)
Gene ID: MGYG000003069_21_18
Type: TC
Location: 23366 - 24193 (+)
Type: TC
Location: 23366 - 24193 (+)
Gene ID: MGYG000003069_21_19
Type: CAZyme
Location: 24348 - 26900 (+)
Type: CAZyme
Location: 24348 - 26900 (+)
Gene ID: MGYG000003069_21_20
Type: pfam
Location: 27319 - 29457 (+)
Type: pfam
Location: 27319 - 29457 (+)
Gene ID: MGYG000003069_21_21
Type: TC
Location: 29920 - 31785 (+)
Type: TC
Location: 29920 - 31785 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium pullorum_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003069_21_9 | vegan > omnivore | 1.57196 | 0.02059 |