Cluster: MGYG000003069_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: MGYG000003069
- CGC Family ID: CGCFAM_10796
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003069_1 | MGYG000003069_1_64 | 80149 | 81405 | + | CE9 |
| TC | MGYG000003069_1 | MGYG000003069_1_65 | 81698 | 83326 | + | 3.A.1.5.20 |
| TC | MGYG000003069_1 | MGYG000003069_1_66 | 83483 | 84595 | + | 3.A.1.5.39 |
| TC | MGYG000003069_1 | MGYG000003069_1_67 | 84597 | 85724 | + | 3.A.1.5.35 |
| TC | MGYG000003069_1 | MGYG000003069_1_68 | 85717 | 87444 | + | 3.A.1.5.11 |
| CAZyme | MGYG000003069_1 | MGYG000003069_1_69 | 87598 | 88893 | - | GH125 |
| CAZyme | MGYG000003069_1 | MGYG000003069_1_70 | 89039 | 91066 | + | GH20 |
| CAZyme | MGYG000003069_1 | MGYG000003069_1_71 | 91368 | 94490 | + | GH38 |
| CAZyme | MGYG000003069_1 | MGYG000003069_1_72 | 94532 | 97666 | + | GH38 |
| STP | MGYG000003069_1 | MGYG000003069_1_73 | 97739 | 99031 | + | SBP_bac_1 |
| TC | MGYG000003069_1 | MGYG000003069_1_74 | 99028 | 99999 | + | 3.A.1.1.42 |
| TC | MGYG000003069_1 | MGYG000003069_1_75 | 99999 | 100838 | + | 3.A.1.1.20 |
| CAZyme | MGYG000003069_1 | MGYG000003069_1_76 | 100835 | 102148 | + | GH5_18 |
| CAZyme | MGYG000003069_1 | MGYG000003069_1_77 | 102261 | 104570 | + | GH3 |
Gene ID: MGYG000003069_1_64
Type: CAZyme
Location: 80149 - 81405 (+)
Type: CAZyme
Location: 80149 - 81405 (+)
Gene ID: MGYG000003069_1_65
Type: TC
Location: 81698 - 83326 (+)
Type: TC
Location: 81698 - 83326 (+)
Gene ID: MGYG000003069_1_66
Type: TC
Location: 83483 - 84595 (+)
Type: TC
Location: 83483 - 84595 (+)
Gene ID: MGYG000003069_1_67
Type: TC
Location: 84597 - 85724 (+)
Type: TC
Location: 84597 - 85724 (+)
Gene ID: MGYG000003069_1_68
Type: TC
Location: 85717 - 87444 (+)
Type: TC
Location: 85717 - 87444 (+)
Gene ID: MGYG000003069_1_69
Type: CAZyme
Location: 87598 - 88893 (-)
Type: CAZyme
Location: 87598 - 88893 (-)
Gene ID: MGYG000003069_1_70
Type: CAZyme
Location: 89039 - 91066 (+)
Type: CAZyme
Location: 89039 - 91066 (+)
Gene ID: MGYG000003069_1_71
Type: CAZyme
Location: 91368 - 94490 (+)
Type: CAZyme
Location: 91368 - 94490 (+)
Gene ID: MGYG000003069_1_72
Type: CAZyme
Location: 94532 - 97666 (+)
Type: CAZyme
Location: 94532 - 97666 (+)
Gene ID: MGYG000003069_1_73
Type: STP
Location: 97739 - 99031 (+)
Type: STP
Location: 97739 - 99031 (+)
Gene ID: MGYG000003069_1_74
Type: TC
Location: 99028 - 99999 (+)
Type: TC
Location: 99028 - 99999 (+)
Gene ID: MGYG000003069_1_75
Type: TC
Location: 99999 - 100838 (+)
Type: TC
Location: 99999 - 100838 (+)
Gene ID: MGYG000003069_1_76
Type: CAZyme
Location: 100835 - 102148 (+)
Type: CAZyme
Location: 100835 - 102148 (+)
Gene ID: MGYG000003069_1_77
Type: CAZyme
Location: 102261 - 104570 (+)
Type: CAZyme
Location: 102261 - 104570 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium pullorum_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003069_1_74 | vegan > omnivore | 1.07675 | 0.02059 |
| MGYG000003069_1_74 | vegetarian > omnivore | 1.88428 | 0.01285 |
| MGYG000003069_1_75 | vegan > omnivore | 1.91269 | 0.02059 |
| MGYG000003069_1_75 | vegetarian > omnivore | 2.27269 | 0.01285 |