Cluster: MGYG000003065_CGC17
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000003065
- CGC Family ID: CGCFAM_09972
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003065_9 | MGYG000003065_9_9 | 7987 | 9570 | + | CE19 |
| pfam | MGYG000003065_9 | MGYG000003065_9_10 | 9642 | 10766 | - | NTP_transferase | Hexapep_GlmU |
| pfam | MGYG000003065_9 | MGYG000003065_9_11 | 10768 | 11907 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | MGYG000003065_9 | MGYG000003065_9_12 | 12148 | 13863 | + | GH154 |
| CAZyme | MGYG000003065_9 | MGYG000003065_9_13 | 13885 | 16053 | + | CBM67 | GH78 |
| TF | MGYG000003065_9 | MGYG000003065_9_14 | 16057 | 17667 | - | HTH_AraC | HTH_AraC |
| TC | MGYG000003065_9 | MGYG000003065_9_15 | 17645 | 19462 | - | 8.A.59.2.1 |
| TC | MGYG000003065_9 | MGYG000003065_9_16 | 19767 | 21146 | + | 3.A.1.1.49 |
| TC | MGYG000003065_9 | MGYG000003065_9_17 | 21228 | 22148 | + | 3.A.1.1.20 |
| TC | MGYG000003065_9 | MGYG000003065_9_18 | 22164 | 23009 | + | 3.A.1.1.11 |
| NULL(UNKNOWN) | MGYG000003065_9 | MGYG000003065_9_19 | 23022 | 23546 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003065_9 | MGYG000003065_9_20 | 23571 | 24182 | + | 9.B.28.1.2 |
| CAZyme | MGYG000003065_9 | MGYG000003065_9_21 | 24195 | 25982 | + | GH2 |
| CAZyme | MGYG000003065_9 | MGYG000003065_9_22 | 25995 | 27116 | + | GH88 |
| CAZyme | MGYG000003065_9 | MGYG000003065_9_23 | 27128 | 28999 | + | PL33_2 |
Gene ID: MGYG000003065_9_9
Type: CAZyme
Location: 7987 - 9570 (+)
Type: CAZyme
Location: 7987 - 9570 (+)
Gene ID: MGYG000003065_9_10
Type: pfam
Location: 9642 - 10766 (-)
Type: pfam
Location: 9642 - 10766 (-)
Gene ID: MGYG000003065_9_11
Type: pfam
Location: 10768 - 11907 (-)
Type: pfam
Location: 10768 - 11907 (-)
Gene ID: MGYG000003065_9_12
Type: CAZyme
Location: 12148 - 13863 (+)
Type: CAZyme
Location: 12148 - 13863 (+)
Gene ID: MGYG000003065_9_13
Type: CAZyme
Location: 13885 - 16053 (+)
Type: CAZyme
Location: 13885 - 16053 (+)
Gene ID: MGYG000003065_9_14
Type: TF
Location: 16057 - 17667 (-)
Type: TF
Location: 16057 - 17667 (-)
Gene ID: MGYG000003065_9_15
Type: TC
Location: 17645 - 19462 (-)
Type: TC
Location: 17645 - 19462 (-)
Gene ID: MGYG000003065_9_16
Type: TC
Location: 19767 - 21146 (+)
Type: TC
Location: 19767 - 21146 (+)
Gene ID: MGYG000003065_9_17
Type: TC
Location: 21228 - 22148 (+)
Type: TC
Location: 21228 - 22148 (+)
Gene ID: MGYG000003065_9_18
Type: TC
Location: 22164 - 23009 (+)
Type: TC
Location: 22164 - 23009 (+)
Gene ID: MGYG000003065_9_19
Type:
Location: 23022 - 23546 (+)
Type:
Location: 23022 - 23546 (+)
Gene ID: MGYG000003065_9_20
Type: TC
Location: 23571 - 24182 (+)
Type: TC
Location: 23571 - 24182 (+)
Gene ID: MGYG000003065_9_21
Type: CAZyme
Location: 24195 - 25982 (+)
Type: CAZyme
Location: 24195 - 25982 (+)
Gene ID: MGYG000003065_9_22
Type: CAZyme
Location: 25995 - 27116 (+)
Type: CAZyme
Location: 25995 - 27116 (+)
Gene ID: MGYG000003065_9_23
Type: CAZyme
Location: 27128 - 28999 (+)
Type: CAZyme
Location: 27128 - 28999 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_B
Species
Ruminococcus_B sp900544395
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.