Cluster: MGYG000003064_CGC16
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 13
- Substrate: arabinogalactan/pectin
- Genome ID: MGYG000003064
- CGC Family ID: CGCFAM_00212
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003064_2 | MGYG000003064_2_116 | 121326 | 123902 | - | 1.B.14.6.14 |
| pfam | MGYG000003064_2 | MGYG000003064_2_117 | 124088 | 125173 | - | Epimerase_2 |
| TC | MGYG000003064_2 | MGYG000003064_2_118 | 125259 | 125876 | + | 1.A.62.2.1 |
| STP | MGYG000003064_2 | MGYG000003064_2_119 | 126072 | 126575 | + | Sigma70_r2 | Sigma70_r4_2 |
| TC | MGYG000003064_2 | MGYG000003064_2_120 | 126862 | 128637 | + | 3.B.1.1.6 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_121 | 128724 | 129410 | - | GT51 |
| TC | MGYG000003064_2 | MGYG000003064_2_122 | 129528 | 130199 | - | 9.B.186.1.3 |
| TC | MGYG000003064_2 | MGYG000003064_2_123 | 130323 | 131675 | - | 2.A.66.1.2 |
| pfam | MGYG000003064_2 | MGYG000003064_2_124 | 131869 | 132756 | + | AP_endonuc_2 |
| pfam | MGYG000003064_2 | MGYG000003064_2_125 | 132815 | 134305 | + | DUF4957 | DUF4992 |
| TC | MGYG000003064_2 | MGYG000003064_2_126 | 134338 | 137670 | + | 1.B.14.6.1 |
| pfam | MGYG000003064_2 | MGYG000003064_2_127 | 137683 | 139866 | + | SusD_RagB | SusD-like_3 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_128 | 140067 | 141755 | + | PL1_2 |
| pfam | MGYG000003064_2 | MGYG000003064_2_129 | 141767 | 142444 | + | DUF3826 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_130 | 142635 | 143558 | + | GH43_18 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_131 | 143580 | 146897 | + | GH142 | GH143 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_132 | 146907 | 149693 | + | CBM67 | GH78 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_133 | 149690 | 151021 | + | GH28 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_134 | 151018 | 152994 | + | CE19 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_135 | 153138 | 155591 | + | GH95 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_136 | 155619 | 157088 | + | GH140 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_137 | 157101 | 160883 | + | CBM67 | GH33 | GH78 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_138 | 160907 | 162991 | + | GH127 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_139 | 163014 | 164894 | + | GH141 |
| CAZyme | MGYG000003064_2 | MGYG000003064_2_140 | 164917 | 167103 | + | GH78 |
Gene ID: MGYG000003064_2_116
Type: TC
Location: 121326 - 123902 (-)
Type: TC
Location: 121326 - 123902 (-)
Gene ID: MGYG000003064_2_117
Type: pfam
Location: 124088 - 125173 (-)
Type: pfam
Location: 124088 - 125173 (-)
Gene ID: MGYG000003064_2_118
Type: TC
Location: 125259 - 125876 (+)
Type: TC
Location: 125259 - 125876 (+)
Gene ID: MGYG000003064_2_119
Type: STP
Location: 126072 - 126575 (+)
Type: STP
Location: 126072 - 126575 (+)
Gene ID: MGYG000003064_2_120
Type: TC
Location: 126862 - 128637 (+)
Type: TC
Location: 126862 - 128637 (+)
Gene ID: MGYG000003064_2_121
Type: CAZyme
Location: 128724 - 129410 (-)
Type: CAZyme
Location: 128724 - 129410 (-)
Gene ID: MGYG000003064_2_122
Type: TC
Location: 129528 - 130199 (-)
Type: TC
Location: 129528 - 130199 (-)
Gene ID: MGYG000003064_2_123
Type: TC
Location: 130323 - 131675 (-)
Type: TC
Location: 130323 - 131675 (-)
Gene ID: MGYG000003064_2_124
Type: pfam
Location: 131869 - 132756 (+)
Type: pfam
Location: 131869 - 132756 (+)
Gene ID: MGYG000003064_2_125
Type: pfam
Location: 132815 - 134305 (+)
Type: pfam
Location: 132815 - 134305 (+)
Gene ID: MGYG000003064_2_126
Type: TC
Location: 134338 - 137670 (+)
Type: TC
Location: 134338 - 137670 (+)
Gene ID: MGYG000003064_2_127
Type: pfam
Location: 137683 - 139866 (+)
Type: pfam
Location: 137683 - 139866 (+)
Gene ID: MGYG000003064_2_128
Type: CAZyme
Location: 140067 - 141755 (+)
Type: CAZyme
Location: 140067 - 141755 (+)
Gene ID: MGYG000003064_2_129
Type: pfam
Location: 141767 - 142444 (+)
Type: pfam
Location: 141767 - 142444 (+)
Gene ID: MGYG000003064_2_130
Type: CAZyme
Location: 142635 - 143558 (+)
Type: CAZyme
Location: 142635 - 143558 (+)
Gene ID: MGYG000003064_2_131
Type: CAZyme
Location: 143580 - 146897 (+)
Type: CAZyme
Location: 143580 - 146897 (+)
Gene ID: MGYG000003064_2_132
Type: CAZyme
Location: 146907 - 149693 (+)
Type: CAZyme
Location: 146907 - 149693 (+)
Gene ID: MGYG000003064_2_133
Type: CAZyme
Location: 149690 - 151021 (+)
Type: CAZyme
Location: 149690 - 151021 (+)
Gene ID: MGYG000003064_2_134
Type: CAZyme
Location: 151018 - 152994 (+)
Type: CAZyme
Location: 151018 - 152994 (+)
Gene ID: MGYG000003064_2_135
Type: CAZyme
Location: 153138 - 155591 (+)
Type: CAZyme
Location: 153138 - 155591 (+)
Gene ID: MGYG000003064_2_136
Type: CAZyme
Location: 155619 - 157088 (+)
Type: CAZyme
Location: 155619 - 157088 (+)
Gene ID: MGYG000003064_2_137
Type: CAZyme
Location: 157101 - 160883 (+)
Type: CAZyme
Location: 157101 - 160883 (+)
Gene ID: MGYG000003064_2_138
Type: CAZyme
Location: 160907 - 162991 (+)
Type: CAZyme
Location: 160907 - 162991 (+)
Gene ID: MGYG000003064_2_139
Type: CAZyme
Location: 163014 - 164894 (+)
Type: CAZyme
Location: 163014 - 164894 (+)
Gene ID: MGYG000003064_2_140
Type: CAZyme
Location: 164917 - 167103 (+)
Type: CAZyme
Location: 164917 - 167103 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides_I
Species
Bacteroides_I graminisolvens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.