Cluster: MGYG000003041_CGC8
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003041
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003041_11 | MGYG000003041_11_2 | 314 | 1924 | + | 3.A.1.5.11 |
| TC | MGYG000003041_11 | MGYG000003041_11_3 | 2013 | 2966 | + | 3.A.1.5.39 |
| TC | MGYG000003041_11 | MGYG000003041_11_4 | 2963 | 3793 | + | 3.A.1.5.39 |
| TC | MGYG000003041_11 | MGYG000003041_11_5 | 3797 | 4792 | + | 3.A.1.5.37 |
| TC | MGYG000003041_11 | MGYG000003041_11_6 | 4782 | 5567 | + | 3.A.1.5.36 |
| pfam | MGYG000003041_11 | MGYG000003041_11_7 | 5644 | 6807 | + | HGD-D |
| pfam | MGYG000003041_11 | MGYG000003041_11_8 | 6963 | 7727 | + | BcrAD_BadFG |
| CAZyme | MGYG000003041_11 | MGYG000003041_11_9 | 7742 | 8959 | + | GT4 |
Gene ID: MGYG000003041_11_2
Type: TC
Location: 314 - 1924 (+)
Type: TC
Location: 314 - 1924 (+)
Gene ID: MGYG000003041_11_3
Type: TC
Location: 2013 - 2966 (+)
Type: TC
Location: 2013 - 2966 (+)
Gene ID: MGYG000003041_11_4
Type: TC
Location: 2963 - 3793 (+)
Type: TC
Location: 2963 - 3793 (+)
Gene ID: MGYG000003041_11_5
Type: TC
Location: 3797 - 4792 (+)
Type: TC
Location: 3797 - 4792 (+)
Gene ID: MGYG000003041_11_6
Type: TC
Location: 4782 - 5567 (+)
Type: TC
Location: 4782 - 5567 (+)
Gene ID: MGYG000003041_11_7
Type: pfam
Location: 5644 - 6807 (+)
Type: pfam
Location: 5644 - 6807 (+)
Gene ID: MGYG000003041_11_8
Type: pfam
Location: 6963 - 7727 (+)
Type: pfam
Location: 6963 - 7727 (+)
Gene ID: MGYG000003041_11_9
Type: CAZyme
Location: 7742 - 8959 (+)
Type: CAZyme
Location: 7742 - 8959 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900544235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003041_11_2 | vegan > omnivore | 3.45364 | 0.00694 |
| MGYG000003041_11_3 | vegan > omnivore | 2.93963 | 0.00694 |
| MGYG000003041_11_3 | vegetarian > omnivore | 1.15839 | 0.03790 |
| MGYG000003041_11_4 | vegan > omnivore | 3.16514 | 0.00694 |
| MGYG000003041_11_4 | vegetarian > omnivore | 1.19462 | 0.03790 |
| MGYG000003041_11_6 | vegan > omnivore | 3.00406 | 0.00694 |
| MGYG000003041_11_6 | vegetarian > omnivore | 1.00443 | 0.03790 |
| MGYG000003041_11_9 | vegan > omnivore | 1.64185 | 0.00694 |