Cluster: MGYG000003037_CGC8
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003037
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003037_8 | MGYG000003037_8_7 | 6084 | 7301 | - | GT4 |
| pfam | MGYG000003037_8 | MGYG000003037_8_8 | 7316 | 8080 | - | BcrAD_BadFG |
| pfam | MGYG000003037_8 | MGYG000003037_8_9 | 8237 | 9400 | - | HGD-D |
| TC | MGYG000003037_8 | MGYG000003037_8_10 | 9477 | 10262 | - | 3.A.1.5.36 |
| TC | MGYG000003037_8 | MGYG000003037_8_11 | 10252 | 11247 | - | 3.A.1.5.37 |
| TC | MGYG000003037_8 | MGYG000003037_8_12 | 11251 | 12081 | - | 3.A.1.5.39 |
| TC | MGYG000003037_8 | MGYG000003037_8_13 | 12078 | 13031 | - | 3.A.1.5.39 |
| TC | MGYG000003037_8 | MGYG000003037_8_14 | 13120 | 14730 | - | 3.A.1.5.11 |
| pfam | MGYG000003037_8 | MGYG000003037_8_15 | 14915 | 16198 | - | HGD-D |
| TC | MGYG000003037_8 | MGYG000003037_8_16 | 16628 | 17698 | - | 3.A.1.1.3 |
| TC | MGYG000003037_8 | MGYG000003037_8_17 | 17702 | 19144 | - | 3.A.1.8.1 |
Gene ID: MGYG000003037_8_7
Type: CAZyme
Location: 6084 - 7301 (-)
Type: CAZyme
Location: 6084 - 7301 (-)
Gene ID: MGYG000003037_8_8
Type: pfam
Location: 7316 - 8080 (-)
Type: pfam
Location: 7316 - 8080 (-)
Gene ID: MGYG000003037_8_9
Type: pfam
Location: 8237 - 9400 (-)
Type: pfam
Location: 8237 - 9400 (-)
Gene ID: MGYG000003037_8_10
Type: TC
Location: 9477 - 10262 (-)
Type: TC
Location: 9477 - 10262 (-)
Gene ID: MGYG000003037_8_11
Type: TC
Location: 10252 - 11247 (-)
Type: TC
Location: 10252 - 11247 (-)
Gene ID: MGYG000003037_8_12
Type: TC
Location: 11251 - 12081 (-)
Type: TC
Location: 11251 - 12081 (-)
Gene ID: MGYG000003037_8_13
Type: TC
Location: 12078 - 13031 (-)
Type: TC
Location: 12078 - 13031 (-)
Gene ID: MGYG000003037_8_14
Type: TC
Location: 13120 - 14730 (-)
Type: TC
Location: 13120 - 14730 (-)
Gene ID: MGYG000003037_8_15
Type: pfam
Location: 14915 - 16198 (-)
Type: pfam
Location: 14915 - 16198 (-)
Gene ID: MGYG000003037_8_16
Type: TC
Location: 16628 - 17698 (-)
Type: TC
Location: 16628 - 17698 (-)
Gene ID: MGYG000003037_8_17
Type: TC
Location: 17702 - 19144 (-)
Type: TC
Location: 17702 - 19144 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902481895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003037_8_7 | vegan > omnivore | 1.72609 | 0.00566 |
| MGYG000003037_8_10 | vegan > omnivore | 2.88339 | 0.00566 |
| MGYG000003037_8_12 | vegan > omnivore | 2.96451 | 0.00566 |
| MGYG000003037_8_12 | vegetarian > omnivore | 1.19545 | 0.03968 |
| MGYG000003037_8_13 | vegan > omnivore | 2.80292 | 0.00566 |
| MGYG000003037_8_13 | vegetarian > omnivore | 1.18987 | 0.03968 |
| MGYG000003037_8_14 | vegan > omnivore | 3.32087 | 0.00566 |
| MGYG000003037_8_14 | vegetarian > omnivore | 1.04033 | 0.03968 |