Cluster: MGYG000003037_CGC1
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003037
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003037_1 | MGYG000003037_1_25 | 33362 | 34801 | - | 2.A.1.3.39 |
| pfam | MGYG000003037_1 | MGYG000003037_1_26 | 35322 | 35663 | + | ArsC |
| pfam | MGYG000003037_1 | MGYG000003037_1_27 | 35851 | 37629 | - | ILVD_EDD_N | ILV_EDD_C |
| TC | MGYG000003037_1 | MGYG000003037_1_28 | 37738 | 37917 | - | 2.A.8.1.8 |
| STP | MGYG000003037_1 | MGYG000003037_1_29 | 38379 | 40328 | - | Pyr_redox_2 |
| NULL(UNKNOWN) | MGYG000003037_1 | MGYG000003037_1_30 | 40431 | 40631 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003037_1 | MGYG000003037_1_31 | 40807 | 43134 | - | 9.A.8.1.6 |
| TC | MGYG000003037_1 | MGYG000003037_1_32 | 43258 | 43479 | - | 9.A.8.1.6 |
| STP | MGYG000003037_1 | MGYG000003037_1_33 | 43519 | 43761 | - | FeoA |
| STP | MGYG000003037_1 | MGYG000003037_1_34 | 43950 | 44198 | - | PTS-HPr |
| TC | MGYG000003037_1 | MGYG000003037_1_35 | 44621 | 46084 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | MGYG000003037_1 | MGYG000003037_1_36 | 46238 | 46693 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003037_1 | MGYG000003037_1_37 | 46697 | 49705 | - | GH2 |
Gene ID: MGYG000003037_1_25
Type: TC
Location: 33362 - 34801 (-)
Type: TC
Location: 33362 - 34801 (-)
Gene ID: MGYG000003037_1_26
Type: pfam
Location: 35322 - 35663 (+)
Type: pfam
Location: 35322 - 35663 (+)
Gene ID: MGYG000003037_1_27
Type: pfam
Location: 35851 - 37629 (-)
Type: pfam
Location: 35851 - 37629 (-)
Gene ID: MGYG000003037_1_28
Type: TC
Location: 37738 - 37917 (-)
Type: TC
Location: 37738 - 37917 (-)
Gene ID: MGYG000003037_1_29
Type: STP
Location: 38379 - 40328 (-)
Type: STP
Location: 38379 - 40328 (-)
Gene ID: MGYG000003037_1_30
Type:
Location: 40431 - 40631 (-)
Type:
Location: 40431 - 40631 (-)
Gene ID: MGYG000003037_1_31
Type: TC
Location: 40807 - 43134 (-)
Type: TC
Location: 40807 - 43134 (-)
Gene ID: MGYG000003037_1_32
Type: TC
Location: 43258 - 43479 (-)
Type: TC
Location: 43258 - 43479 (-)
Gene ID: MGYG000003037_1_33
Type: STP
Location: 43519 - 43761 (-)
Type: STP
Location: 43519 - 43761 (-)
Gene ID: MGYG000003037_1_34
Type: STP
Location: 43950 - 44198 (-)
Type: STP
Location: 43950 - 44198 (-)
Gene ID: MGYG000003037_1_35
Type: TC
Location: 44621 - 46084 (-)
Type: TC
Location: 44621 - 46084 (-)
Gene ID: MGYG000003037_1_36
Type:
Location: 46238 - 46693 (-)
Type:
Location: 46238 - 46693 (-)
Gene ID: MGYG000003037_1_37
Type: CAZyme
Location: 46697 - 49705 (-)
Type: CAZyme
Location: 46697 - 49705 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902481895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.