Cluster: MGYG000003036_CGC8
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003036
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003036_14 | MGYG000003036_14_32 | 28033 | 29202 | - | GT4 |
| pfam | MGYG000003036_14 | MGYG000003036_14_33 | 29199 | 29819 | - | Hexapep |
| pfam | MGYG000003036_14 | MGYG000003036_14_34 | 29826 | 31043 | - | Epimerase | Polysacc_synt_C |
| TC | MGYG000003036_14 | MGYG000003036_14_35 | 31045 | 32103 | - | 9.B.18.2.1 |
| CAZyme | MGYG000003036_14 | MGYG000003036_14_36 | 32096 | 33298 | - | GT4 |
| pfam | MGYG000003036_14 | MGYG000003036_14_37 | 33303 | 34277 | - | ATP-grasp_3 | ATPgrasp_Ter | PylC-like_N |
| TC | MGYG000003036_14 | MGYG000003036_14_38 | 34270 | 34935 | - | 9.B.18.1.2 |
| STP | MGYG000003036_14 | MGYG000003036_14_39 | 34928 | 36181 | - | Aminotran_1_2 |
| TC | MGYG000003036_14 | MGYG000003036_14_40 | 36197 | 38077 | - | 9.B.18.2.1 |
Gene ID: MGYG000003036_14_32
Type: CAZyme
Location: 28033 - 29202 (-)
Type: CAZyme
Location: 28033 - 29202 (-)
Gene ID: MGYG000003036_14_33
Type: pfam
Location: 29199 - 29819 (-)
Type: pfam
Location: 29199 - 29819 (-)
Gene ID: MGYG000003036_14_34
Type: pfam
Location: 29826 - 31043 (-)
Type: pfam
Location: 29826 - 31043 (-)
Gene ID: MGYG000003036_14_35
Type: TC
Location: 31045 - 32103 (-)
Type: TC
Location: 31045 - 32103 (-)
Gene ID: MGYG000003036_14_36
Type: CAZyme
Location: 32096 - 33298 (-)
Type: CAZyme
Location: 32096 - 33298 (-)
Gene ID: MGYG000003036_14_37
Type: pfam
Location: 33303 - 34277 (-)
Type: pfam
Location: 33303 - 34277 (-)
Gene ID: MGYG000003036_14_38
Type: TC
Location: 34270 - 34935 (-)
Type: TC
Location: 34270 - 34935 (-)
Gene ID: MGYG000003036_14_39
Type: STP
Location: 34928 - 36181 (-)
Type: STP
Location: 34928 - 36181 (-)
Gene ID: MGYG000003036_14_40
Type: TC
Location: 36197 - 38077 (-)
Type: TC
Location: 36197 - 38077 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900542555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003036_14_34 | vegetarian > omnivore | 1.46758 | 0.03761 |
| MGYG000003036_14_34 | vegetarian > vegan | 1.96050 | 0.02024 |