Cluster: MGYG000003030_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003030
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003030_43 | MGYG000003030_43_3 | 2427 | 4877 | - | 4.A.1.1.8 |
| TF | MGYG000003030_43 | MGYG000003030_43_4 | 5105 | 5824 | + | GntR |
| TC | MGYG000003030_43 | MGYG000003030_43_5 | 6131 | 7447 | + | 3.A.1.1.45 |
| TC | MGYG000003030_43 | MGYG000003030_43_6 | 7535 | 8389 | + | 3.A.1.1.45 |
| TC | MGYG000003030_43 | MGYG000003030_43_7 | 8389 | 9228 | + | 3.A.1.1.45 |
| TC | MGYG000003030_43 | MGYG000003030_43_8 | 9296 | 10495 | + | 3.A.1.1.22 |
| CAZyme | MGYG000003030_43 | MGYG000003030_43_9 | 10951 | 13218 | - | GT35 |
Gene ID: MGYG000003030_43_3
Type: TC
Location: 2427 - 4877 (-)
Type: TC
Location: 2427 - 4877 (-)
Gene ID: MGYG000003030_43_4
Type: TF
Location: 5105 - 5824 (+)
Type: TF
Location: 5105 - 5824 (+)
Gene ID: MGYG000003030_43_5
Type: TC
Location: 6131 - 7447 (+)
Type: TC
Location: 6131 - 7447 (+)
Gene ID: MGYG000003030_43_6
Type: TC
Location: 7535 - 8389 (+)
Type: TC
Location: 7535 - 8389 (+)
Gene ID: MGYG000003030_43_7
Type: TC
Location: 8389 - 9228 (+)
Type: TC
Location: 8389 - 9228 (+)
Gene ID: MGYG000003030_43_8
Type: TC
Location: 9296 - 10495 (+)
Type: TC
Location: 9296 - 10495 (+)
Gene ID: MGYG000003030_43_9
Type: CAZyme
Location: 10951 - 13218 (-)
Type: CAZyme
Location: 10951 - 13218 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900549455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.