Cluster: MGYG000003029_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003029
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003029_41 | MGYG000003029_41_1 | 17 | 1642 | - | 4.A.3.1.1 |
| CAZyme | MGYG000003029_41 | MGYG000003029_41_2 | 1819 | 3261 | - | GH1 |
| TF | MGYG000003029_41 | MGYG000003029_41_3 | 3604 | 4641 | + | LacI |
| CAZyme | MGYG000003029_41 | MGYG000003029_41_4 | 4918 | 6357 | - | GH1 |
| TC | MGYG000003029_41 | MGYG000003029_41_5 | 6424 | 8199 | - | 4.A.3.1.1 |
| TF | MGYG000003029_41 | MGYG000003029_41_6 | 8557 | 9561 | + | LacI |
| TC | MGYG000003029_41 | MGYG000003029_41_7 | 9776 | 10114 | + | 4.A.3.1.2 |
Gene ID: MGYG000003029_41_1
Type: TC
Location: 17 - 1642 (-)
Type: TC
Location: 17 - 1642 (-)
Gene ID: MGYG000003029_41_2
Type: CAZyme
Location: 1819 - 3261 (-)
Type: CAZyme
Location: 1819 - 3261 (-)
Gene ID: MGYG000003029_41_3
Type: TF
Location: 3604 - 4641 (+)
Type: TF
Location: 3604 - 4641 (+)
Gene ID: MGYG000003029_41_4
Type: CAZyme
Location: 4918 - 6357 (-)
Type: CAZyme
Location: 4918 - 6357 (-)
Gene ID: MGYG000003029_41_5
Type: TC
Location: 6424 - 8199 (-)
Type: TC
Location: 6424 - 8199 (-)
Gene ID: MGYG000003029_41_6
Type: TF
Location: 8557 - 9561 (+)
Type: TF
Location: 8557 - 9561 (+)
Gene ID: MGYG000003029_41_7
Type: TC
Location: 9776 - 10114 (+)
Type: TC
Location: 9776 - 10114 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900543615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003029_41_3 | vegetarian > omnivore | 1.08614 | 0.02677 |