Cluster: MGYG000003029_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003029
- CGC Family ID: CGCFAM_04553
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003029_95 | MGYG000003029_95_1 | 1 | 471 | + | 3.A.1.5.25 |
| pfam | MGYG000003029_95 | MGYG000003029_95_2 | 549 | 1712 | + | HGD-D |
| pfam | MGYG000003029_95 | MGYG000003029_95_3 | 1868 | 2632 | + | BcrAD_BadFG |
| CAZyme | MGYG000003029_95 | MGYG000003029_95_4 | 2647 | 3864 | + | GT4 |
Gene ID: MGYG000003029_95_1
Type: TC
Location: 1 - 471 (+)
Type: TC
Location: 1 - 471 (+)
Gene ID: MGYG000003029_95_2
Type: pfam
Location: 549 - 1712 (+)
Type: pfam
Location: 549 - 1712 (+)
Gene ID: MGYG000003029_95_3
Type: pfam
Location: 1868 - 2632 (+)
Type: pfam
Location: 1868 - 2632 (+)
Gene ID: MGYG000003029_95_4
Type: CAZyme
Location: 2647 - 3864 (+)
Type: CAZyme
Location: 2647 - 3864 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900543615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003029_95_1 | vegan > omnivore | 3.67215 | 0.00701 |
| MGYG000003029_95_1 | vegetarian > omnivore | 2.09887 | 0.03722 |
| MGYG000003029_95_4 | vegan > omnivore | 1.80095 | 0.00701 |