Cluster: MGYG000003015_CGC9
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003015
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003015_60 | MGYG000003015_60_4 | 3055 | 3870 | + | GT2 |
| TC | MGYG000003015_60 | MGYG000003015_60_5 | 3867 | 5243 | + | 2.A.38.1.1 |
| TC | MGYG000003015_60 | MGYG000003015_60_6 | 5322 | 5708 | + | 1.A.22.1.1 |
Gene ID: MGYG000003015_60_4
Type: CAZyme
Location: 3055 - 3870 (+)
Type: CAZyme
Location: 3055 - 3870 (+)
Gene ID: MGYG000003015_60_5
Type: TC
Location: 3867 - 5243 (+)
Type: TC
Location: 3867 - 5243 (+)
Gene ID: MGYG000003015_60_6
Type: TC
Location: 5322 - 5708 (+)
Type: TC
Location: 5322 - 5708 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp902481695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003015_60_4 | vegan > omnivore | 1.92270 | 0.02609 |
| MGYG000003015_60_4 | vegetarian > omnivore | 1.02271 | 0.02809 |
| MGYG000003015_60_5 | vegetarian > omnivore | 1.11540 | 0.00710 |
| MGYG000003015_60_6 | vegan > omnivore | 1.84183 | 0.02609 |
| MGYG000003015_60_6 | vegetarian > omnivore | 3.55282 | 0.02809 |
| MGYG000003015_60_6 | vegetarian > vegan | 1.71099 | 0.03476 |