Cluster: MGYG000003015_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003015
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003015_22 | MGYG000003015_22_4 | 4705 | 6609 | + | 2.A.37.1.2 |
| pfam | MGYG000003015_22 | MGYG000003015_22_5 | 6646 | 8781 | - | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | MGYG000003015_22 | MGYG000003015_22_6 | 8900 | 9886 | - | 3.A.1.15.5 |
| pfam | MGYG000003015_22 | MGYG000003015_22_7 | 10051 | 10812 | - | ThiF |
| CAZyme | MGYG000003015_22 | MGYG000003015_22_8 | 10812 | 11939 | - | GH102 |
Gene ID: MGYG000003015_22_4
Type: TC
Location: 4705 - 6609 (+)
Type: TC
Location: 4705 - 6609 (+)
Gene ID: MGYG000003015_22_5
Type: pfam
Location: 6646 - 8781 (-)
Type: pfam
Location: 6646 - 8781 (-)
Gene ID: MGYG000003015_22_6
Type: TC
Location: 8900 - 9886 (-)
Type: TC
Location: 8900 - 9886 (-)
Gene ID: MGYG000003015_22_7
Type: pfam
Location: 10051 - 10812 (-)
Type: pfam
Location: 10051 - 10812 (-)
Gene ID: MGYG000003015_22_8
Type: CAZyme
Location: 10812 - 11939 (-)
Type: CAZyme
Location: 10812 - 11939 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp902481695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003015_22_5 | vegan > omnivore | 1.21328 | 0.02609 |
| MGYG000003015_22_5 | vegetarian > omnivore | 1.03314 | 0.02809 |
| MGYG000003015_22_6 | vegan > omnivore | 1.59003 | 0.02609 |
| MGYG000003015_22_7 | vegan > omnivore | 1.44191 | 0.02609 |
| MGYG000003015_22_7 | vegetarian > omnivore | 1.12833 | 0.02809 |