Cluster: MGYG000003015_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003015
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003015_81 | MGYG000003015_81_5 | 2558 | 4402 | - | 3.A.1.106.2 |
| TF | MGYG000003015_81 | MGYG000003015_81_6 | 4479 | 5369 | - | HTH_AraC | HTH_AraC |
| pfam | MGYG000003015_81 | MGYG000003015_81_7 | 5473 | 5817 | + | CMD |
| CAZyme | MGYG000003015_81 | MGYG000003015_81_8 | 5888 | 6943 | - | GT9 |
Gene ID: MGYG000003015_81_5
Type: TC
Location: 2558 - 4402 (-)
Type: TC
Location: 2558 - 4402 (-)
Gene ID: MGYG000003015_81_6
Type: TF
Location: 4479 - 5369 (-)
Type: TF
Location: 4479 - 5369 (-)
Gene ID: MGYG000003015_81_7
Type: pfam
Location: 5473 - 5817 (+)
Type: pfam
Location: 5473 - 5817 (+)
Gene ID: MGYG000003015_81_8
Type: CAZyme
Location: 5888 - 6943 (-)
Type: CAZyme
Location: 5888 - 6943 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp902481695
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003015_81_5 | vegetarian > vegan | 1.60017 | 0.03476 |
| MGYG000003015_81_6 | vegetarian > vegan | 1.11585 | 0.03476 |
| MGYG000003015_81_7 | vegan > omnivore | 1.28048 | 0.02609 |
| MGYG000003015_81_7 | vegetarian > omnivore | 1.11326 | 0.02809 |
| MGYG000003015_81_8 | vegetarian > omnivore | 1.63881 | 0.02809 |
| MGYG000003015_81_8 | vegetarian > vegan | 1.30631 | 0.03476 |