Cluster: MGYG000003011_CGC13
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003011
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003011_23 | MGYG000003011_23_9 | 7429 | 8598 | - | CE9 |
| STP | MGYG000003011_23 | MGYG000003011_23_10 | 8714 | 9880 | - | SIS | SIS |
| TF | MGYG000003011_23 | MGYG000003011_23_11 | 9992 | 10726 | - | GntR |
| TC | MGYG000003011_23 | MGYG000003011_23_12 | 10814 | 11242 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | MGYG000003011_23 | MGYG000003011_23_13 | 11324 | 11947 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003011_23 | MGYG000003011_23_14 | 12136 | 12975 | - | 4.A.6.1.18 |
| TC | MGYG000003011_23 | MGYG000003011_23_15 | 12965 | 13852 | - | 4.A.6.1.18 |
| TC | MGYG000003011_23 | MGYG000003011_23_16 | 13946 | 14410 | - | 4.A.6.1.18 |
| CAZyme | MGYG000003011_23 | MGYG000003011_23_17 | 14413 | 16209 | - | GH35 |
| pfam | MGYG000003011_23 | MGYG000003011_23_18 | 16696 | 17169 | - | DUF386 |
| CAZyme | MGYG000003011_23 | MGYG000003011_23_19 | 17202 | 18371 | - | CE9 |
| TF | MGYG000003011_23 | MGYG000003011_23_20 | 18515 | 19246 | - | GntR |
| TC | MGYG000003011_23 | MGYG000003011_23_21 | 19479 | 20969 | - | 4.A.1.1.7 |
Gene ID: MGYG000003011_23_9
Type: CAZyme
Location: 7429 - 8598 (-)
Type: CAZyme
Location: 7429 - 8598 (-)
Gene ID: MGYG000003011_23_10
Type: STP
Location: 8714 - 9880 (-)
Type: STP
Location: 8714 - 9880 (-)
Gene ID: MGYG000003011_23_11
Type: TF
Location: 9992 - 10726 (-)
Type: TF
Location: 9992 - 10726 (-)
Gene ID: MGYG000003011_23_12
Type: TC
Location: 10814 - 11242 (-)
Type: TC
Location: 10814 - 11242 (-)
Gene ID: MGYG000003011_23_13
Type:
Location: 11324 - 11947 (-)
Type:
Location: 11324 - 11947 (-)
Gene ID: MGYG000003011_23_14
Type: TC
Location: 12136 - 12975 (-)
Type: TC
Location: 12136 - 12975 (-)
Gene ID: MGYG000003011_23_15
Type: TC
Location: 12965 - 13852 (-)
Type: TC
Location: 12965 - 13852 (-)
Gene ID: MGYG000003011_23_16
Type: TC
Location: 13946 - 14410 (-)
Type: TC
Location: 13946 - 14410 (-)
Gene ID: MGYG000003011_23_17
Type: CAZyme
Location: 14413 - 16209 (-)
Type: CAZyme
Location: 14413 - 16209 (-)
Gene ID: MGYG000003011_23_18
Type: pfam
Location: 16696 - 17169 (-)
Type: pfam
Location: 16696 - 17169 (-)
Gene ID: MGYG000003011_23_19
Type: CAZyme
Location: 17202 - 18371 (-)
Type: CAZyme
Location: 17202 - 18371 (-)
Gene ID: MGYG000003011_23_20
Type: TF
Location: 18515 - 19246 (-)
Type: TF
Location: 18515 - 19246 (-)
Gene ID: MGYG000003011_23_21
Type: TC
Location: 19479 - 20969 (-)
Type: TC
Location: 19479 - 20969 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900545605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003011_23_14 | vegetarian > vegan | 2.50671 | 0.02517 |
| MGYG000003011_23_16 | vegetarian > vegan | 3.39072 | 0.02517 |
| MGYG000003011_23_17 | vegetarian > vegan | 2.79049 | 0.02517 |
| MGYG000003011_23_20 | vegetarian > vegan | 3.36512 | 0.02517 |