Cluster: MGYG000003007_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003007
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003007_11 | MGYG000003007_11_12 | 17850 | 18176 | + | 4.A.3.2.7 |
| TC | MGYG000003007_11 | MGYG000003007_11_13 | 18223 | 18516 | + | 4.A.3.2.6 |
| TC | MGYG000003007_11 | MGYG000003007_11_14 | 18526 | 19875 | + | 4.A.3.2.6 |
| CAZyme | MGYG000003007_11 | MGYG000003007_11_15 | 19877 | 21331 | + | GH1 |
Gene ID: MGYG000003007_11_12
Type: TC
Location: 17850 - 18176 (+)
Type: TC
Location: 17850 - 18176 (+)
Gene ID: MGYG000003007_11_13
Type: TC
Location: 18223 - 18516 (+)
Type: TC
Location: 18223 - 18516 (+)
Gene ID: MGYG000003007_11_14
Type: TC
Location: 18526 - 19875 (+)
Type: TC
Location: 18526 - 19875 (+)
Gene ID: MGYG000003007_11_15
Type: CAZyme
Location: 19877 - 21331 (+)
Type: CAZyme
Location: 19877 - 21331 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003007_11_12 | vegetarian > vegan | 1.35645 | 0.02517 |
| MGYG000003007_11_13 | vegetarian > vegan | 2.14585 | 0.02517 |
| MGYG000003007_11_14 | vegetarian > vegan | 1.87212 | 0.02517 |
| MGYG000003007_11_15 | vegetarian > vegan | 2.14215 | 0.02517 |