Cluster: MGYG000003007_CGC14
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000003007
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003007_23 | MGYG000003007_23_9 | 11062 | 12525 | - | 2.A.118.1.2 |
| TF | MGYG000003007_23 | MGYG000003007_23_10 | 12723 | 13457 | - | GntR |
| pfam | MGYG000003007_23 | MGYG000003007_23_11 | 13712 | 16465 | - | Sigma54_activat | PRD | EIIA-man |
| CAZyme | MGYG000003007_23 | MGYG000003007_23_12 | 17014 | 18450 | - | GH32 |
| pfam | MGYG000003007_23 | MGYG000003007_23_13 | 18480 | 18884 | - | EIIA-man |
| TC | MGYG000003007_23 | MGYG000003007_23_14 | 18918 | 19778 | - | 4.A.6.1.13 |
| TC | MGYG000003007_23 | MGYG000003007_23_15 | 19771 | 20544 | - | 4.A.6.1.13 |
| TC | MGYG000003007_23 | MGYG000003007_23_16 | 20560 | 21048 | - | 4.A.6.1.16 |
Gene ID: MGYG000003007_23_9
Type: TC
Location: 11062 - 12525 (-)
Type: TC
Location: 11062 - 12525 (-)
Gene ID: MGYG000003007_23_10
Type: TF
Location: 12723 - 13457 (-)
Type: TF
Location: 12723 - 13457 (-)
Gene ID: MGYG000003007_23_11
Type: pfam
Location: 13712 - 16465 (-)
Type: pfam
Location: 13712 - 16465 (-)
Gene ID: MGYG000003007_23_12
Type: CAZyme
Location: 17014 - 18450 (-)
Type: CAZyme
Location: 17014 - 18450 (-)
Gene ID: MGYG000003007_23_13
Type: pfam
Location: 18480 - 18884 (-)
Type: pfam
Location: 18480 - 18884 (-)
Gene ID: MGYG000003007_23_14
Type: TC
Location: 18918 - 19778 (-)
Type: TC
Location: 18918 - 19778 (-)
Gene ID: MGYG000003007_23_15
Type: TC
Location: 19771 - 20544 (-)
Type: TC
Location: 19771 - 20544 (-)
Gene ID: MGYG000003007_23_16
Type: TC
Location: 20560 - 21048 (-)
Type: TC
Location: 20560 - 21048 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003007_23_10 | vegan > omnivore | 1.65587 | 0.01057 |
| MGYG000003007_23_10 | vegetarian > omnivore | 2.39948 | 0.02617 |
| MGYG000003007_23_16 | vegetarian > omnivore | 1.53508 | 0.02617 |