Cluster: MGYG000003007_CGC11
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003007
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003007_17 | MGYG000003007_17_12 | 11089 | 12576 | + | 4.A.1.1.7 |
| TF | MGYG000003007_17 | MGYG000003007_17_13 | 12809 | 13540 | + | GntR |
| CAZyme | MGYG000003007_17 | MGYG000003007_17_14 | 13684 | 14853 | + | CE9 |
| pfam | MGYG000003007_17 | MGYG000003007_17_15 | 14886 | 15359 | + | DUF386 |
| CAZyme | MGYG000003007_17 | MGYG000003007_17_16 | 15845 | 17641 | + | GH35 |
| TC | MGYG000003007_17 | MGYG000003007_17_17 | 17644 | 18108 | + | 4.A.6.1.18 |
| TC | MGYG000003007_17 | MGYG000003007_17_18 | 18202 | 19089 | + | 4.A.6.1.18 |
| TC | MGYG000003007_17 | MGYG000003007_17_19 | 19079 | 19918 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | MGYG000003007_17 | MGYG000003007_17_20 | 20107 | 20730 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003007_17 | MGYG000003007_17_21 | 20812 | 21240 | + | 4.A.6.1.8 |
| TF | MGYG000003007_17 | MGYG000003007_17_22 | 21328 | 22062 | + | GntR |
| STP | MGYG000003007_17 | MGYG000003007_17_23 | 22174 | 23340 | + | SIS | SIS |
| CAZyme | MGYG000003007_17 | MGYG000003007_17_24 | 23457 | 24626 | + | CE9 |
Gene ID: MGYG000003007_17_12
Type: TC
Location: 11089 - 12576 (+)
Type: TC
Location: 11089 - 12576 (+)
Gene ID: MGYG000003007_17_13
Type: TF
Location: 12809 - 13540 (+)
Type: TF
Location: 12809 - 13540 (+)
Gene ID: MGYG000003007_17_14
Type: CAZyme
Location: 13684 - 14853 (+)
Type: CAZyme
Location: 13684 - 14853 (+)
Gene ID: MGYG000003007_17_15
Type: pfam
Location: 14886 - 15359 (+)
Type: pfam
Location: 14886 - 15359 (+)
Gene ID: MGYG000003007_17_16
Type: CAZyme
Location: 15845 - 17641 (+)
Type: CAZyme
Location: 15845 - 17641 (+)
Gene ID: MGYG000003007_17_17
Type: TC
Location: 17644 - 18108 (+)
Type: TC
Location: 17644 - 18108 (+)
Gene ID: MGYG000003007_17_18
Type: TC
Location: 18202 - 19089 (+)
Type: TC
Location: 18202 - 19089 (+)
Gene ID: MGYG000003007_17_19
Type: TC
Location: 19079 - 19918 (+)
Type: TC
Location: 19079 - 19918 (+)
Gene ID: MGYG000003007_17_20
Type:
Location: 20107 - 20730 (+)
Type:
Location: 20107 - 20730 (+)
Gene ID: MGYG000003007_17_21
Type: TC
Location: 20812 - 21240 (+)
Type: TC
Location: 20812 - 21240 (+)
Gene ID: MGYG000003007_17_22
Type: TF
Location: 21328 - 22062 (+)
Type: TF
Location: 21328 - 22062 (+)
Gene ID: MGYG000003007_17_23
Type: STP
Location: 22174 - 23340 (+)
Type: STP
Location: 22174 - 23340 (+)
Gene ID: MGYG000003007_17_24
Type: CAZyme
Location: 23457 - 24626 (+)
Type: CAZyme
Location: 23457 - 24626 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900541025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003007_17_13 | vegetarian > vegan | 3.29152 | 0.02517 |
| MGYG000003007_17_16 | vegetarian > vegan | 2.70958 | 0.02517 |
| MGYG000003007_17_17 | vegetarian > vegan | 3.31885 | 0.02517 |
| MGYG000003007_17_18 | vegetarian > vegan | 2.44294 | 0.03572 |
| MGYG000003007_17_19 | vegetarian > vegan | 2.41515 | 0.02517 |